RSKR_0000632700 (Rhabditophanes kr3021)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 RSKR_0000632700 T235850_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Irx4
M00416_2.00 		Mus musculus
NNNDAMAH
DTKTHNNN		 PBM
Berger et al.(2008)
Irx4_2242 		0.827 0.821
Irx6
M00456_2.00 		Mus musculus
NNDAHWN
NWDTHNN		 PBM
Berger et al.(2008)
Irx6_2623 		0.816 0.821
ara
M06518_2.00 		Drosophila melanogaster
WWACA
TGTWW		 B1H
Mathelier et al.(2014)
MA0210.1 		0.786 0.839
ara
M06313_2.00 		Drosophila melanogaster
TGTWWWNN
NNWWWACA		 B1H
Zhu et al.(2011)
Ara_Cell_FBgn0015904 		0.786 0.839
ara
M06314_2.00 		Drosophila melanogaster
DWWACA
TGTWWH		 B1H
Zhu et al.(2011)
Ara_SOLEXA_FBgn0015904 		0.786 0.839
Irx2
M00386_2.00 		Mus musculus
NNDACAHNN
NNDTGTHNN		 PBM
Berger et al.(2008)
Irx2_0900 		0.778 0.804
Irx5
M00455_2.00 		Mus musculus
NNNDACAHN
NDTGTHNNN		 PBM
Berger et al.(2008)
Irx5_2385 		0.778 0.804
IRX2
M03212_2.00 		Homo sapiens
NDACAYRACAHN
NDTGTYRTGTHN		 SELEX
Jolma et al.(2013)
IRX2_1 		0.778 0.804
IRX5
M03222_2.00 		Homo sapiens
NDACAYRACAHN
NDTGTYRTGTHN		 SELEX
Jolma et al.(2013)
IRX5_1 		0.778 0.804
IRX5
M05315_2.00 		Homo sapiens
NBDTGTHNDACAYVN
NBRTGTHNDACAHVN		 SELEX
Yin et al.(2017)
IRX5_eDBD_HT-SELEX 		0.778 0.804
IRX5
M05316_2.00 		Homo sapiens
WYRYGHHNHAYRYRY
RYRYRTDNDDCRYRW		 SELEX
Yin et al.(2017)
IRX5_eDBD_Methyl-HT-SELEX 		0.778 0.804
caup
M06519_2.00 		Drosophila melanogaster
WAACA
TGTTW		 B1H
Mathelier et al.(2014)
MA0217.1 		0.777 0.786
caup
M06315_2.00 		Drosophila melanogaster
HWDWAACA
TGTTWHWD		 B1H
Zhu et al.(2011)
Caup_Cell_FBgn0015919 		0.777 0.786
caup
M06316_2.00 		Drosophila melanogaster
NDDACA
TGTHHN		 B1H
Zhu et al.(2011)
Caup_SOLEXA_FBgn0015919 		0.777 0.786
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
RSKR_0000632700.1 Homeodomain 92 150

Links

Other Homeodomain family TFs
Other Rhabditophanes kr3021 TFs

381 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PIF1 Arabidopsis thaliana AT2G20180 D 0.000
Carubv10013621m.g Capsella rubella Carubv10013621m.g I 0.000
Ca_07691 Cicer arietinum Ca_07691 I 0.000
Ca_12298 Cicer arietinum Ca_12298 I 0.000
Cla002793 Citrullus lanatus Cla002793 I 0.000
Cla015231 Citrullus lanatus Cla015231 I 0.000
30204.m001816 Ricinus communis 30204.m001816 I 0.000
cassava2968.m1 Manihot esculenta cassava2968.m1 I 0.000
cassava34241.m1 Manihot esculenta cassava34241.m1 I 0.000
Cucsa.078700 Cucumis sativus Cucsa.078700 I 0.000
mgf008404m Mimulus guttatus mgf008404m I 0.000
Aquca_034_00180 Aquilegia coerulea Aquca_034_00180 I 0.000
Bostr.7903s0150 Boechera stricta Bostr.7903s0150 I 0.000
Cagra.0338s0008 Capsella grandiflora Cagra.0338s0008 I 0.000
Cagra.1225s0008 Capsella grandiflora Cagra.1225s0008 I 0.000
Carubv10007459m.g Capsella rubella Carubv10007459m.g I 0.000
TCM_003125 Theobroma cacao TCM_003125 I 0.000
Ciclev10019585m.g Citrus clementina Ciclev10019585m.g I 0.000
evm.TU.supercontig_8.199 Carica papaya evm.TU.supercontig_8.199 I 0.000
gene08411-v1.0-hybrid Fragaria vesca gene08411-v1.0-hybrid I 0.000
Gorai.001G183400 Gossypium raimondii Gorai.001G183400 I 0.000
Gorai.001G234900 Gossypium raimondii Gorai.001G234900 I 0.000
Gorai.007G151900 Gossypium raimondii Gorai.007G151900 I 0.000
Lus10011899.g Linum usitatissimum Lus10011899.g I 0.000
Lus10022833.g Linum usitatissimum Lus10022833.g I 0.000
MDP0000289642 Malus domestica MDP0000289642 I 0.000
orange1.1g014090m.g Citrus sinensis orange1.1g014090m.g I 0.000
Pavir.Ab03239 Panicum virgatum Pavir.Ab03239 I 0.000
Pavir.J11618 Panicum virgatum Pavir.J11618 I 0.000
SapurV1A.0937s0140 Salix purpurea SapurV1A.0937s0140 I 0.000
Thhalv10001974m.g Eutrema salsugineum Thhalv10001974m.g I 0.000
PK06970.1 Cannabis sativa PK06970.1 I 0.000
MTR_7g099540 Medicago truncatula MTR_7g099540 I 0.000
BGIOSGA005408 Oryza indica BGIOSGA005408 I 0.000
Bo7g003890 Brassica oleracea Bo7g003890 I 0.000
BRADI3G54640 Brachypodium distachyon BRADI3G54640 I 0.000
PIL5 Arabidopsis lyrata fgenesh1_pm.C_scaffold_3002562 I 0.000
GLYMA02G19000 Glycine max GLYMA02G19000 I 0.000
GLYMA03G32747 Glycine max GLYMA03G32747 I 0.000
GLYMA10G04890 Glycine max GLYMA10G04890 I 0.000
GLYMA11G05810 Glycine max GLYMA11G05810 I 0.000
GLYMA13G19250 Glycine max GLYMA13G19250 I 0.000
GRMZM2G030744 Zea mays GRMZM2G030744 I 0.000
GSMUA_Achr1G16830_001 Musa acuminata GSMUA_Achr1G16830_001 I 0.000
GSMUA_Achr6G30080_001 Musa acuminata GSMUA_Achr6G30080_001 I 0.000
LPERR02G30060 Leersia perrieri LPERR02G30060 I 0.000
MTR_1g069155 Medicago truncatula MTR_1g069155 I 0.000
Solyc09g063010.2 Solanum lycopersicum Solyc09g063010.2 I 0.000
OB02G43130 Oryza brachyantha OB02G43130 I 0.000
OGLUM02G37650 Oryza glumaepatula OGLUM02G37650 I 0.000
OLONG_013198 Oryza longistaminata OLONG_013198 I 0.000
OMERI02G34410 Oryza meridionalis OMERI02G34410 I 0.000
ONIVA02G38510 Oryza nivara ONIVA02G38510 I 0.000
OPUNC02G33630 Oryza punctata OPUNC02G33630 I 0.000
ORGLA02G0316800 Oryza glaberrima ORGLA02G0316800 I 0.000
ORUFI02G37990 Oryza rufipogon ORUFI02G37990 I 0.000
OS02G0805250 Oryza sativa OS02G0805250 I 0.000
PGSC0003DMG400018950 Solanum tuberosum PGSC0003DMG400018950 I 0.000
POPTR_0002s25410 Populus trichocarpa POPTR_0002s25410 I 0.000
PRUPE_ppa004070mg Prunus persica PRUPE_ppa004070mg I 0.000
Sb04g036450 Sorghum bicolor Sb04g036450 I 0.000
Si017762m.g Setaria italica Si017762m.g I 0.000