TMUE_s0040004400 (Trichuris muris)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 TMUE_s0040004400 T236932_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ara
M06518_2.00 		Drosophila melanogaster
WWACA
TGTWW		 B1H
Mathelier et al.(2014)
MA0210.1 		0.841 0.895
caup
M06519_2.00 		Drosophila melanogaster
WAACA
TGTTW		 B1H
Mathelier et al.(2014)
MA0217.1 		0.841 0.895
ara
M06313_2.00 		Drosophila melanogaster
TGTWWWNN
NNWWWACA		 B1H
Zhu et al.(2011)
Ara_Cell_FBgn0015904 		0.841 0.895
ara
M06314_2.00 		Drosophila melanogaster
DWWACA
TGTWWH		 B1H
Zhu et al.(2011)
Ara_SOLEXA_FBgn0015904 		0.841 0.895
caup
M06315_2.00 		Drosophila melanogaster
HWDWAACA
TGTTWHWD		 B1H
Zhu et al.(2011)
Caup_Cell_FBgn0015919 		0.841 0.895
caup
M06316_2.00 		Drosophila melanogaster
NDDACA
TGTHHN		 B1H
Zhu et al.(2011)
Caup_SOLEXA_FBgn0015919 		0.841 0.895
Irx6
M00456_2.00 		Mus musculus
NNDAHWN
NWDTHNN		 PBM
Berger et al.(2008)
Irx6_2623 		0.807 0.877
Irx2
M00386_2.00 		Mus musculus
NNDACAHNN
NNDTGTHNN		 PBM
Berger et al.(2008)
Irx2_0900 		0.802 0.842
Irx5
M00455_2.00 		Mus musculus
NNNDACAHN
NDTGTHNNN		 PBM
Berger et al.(2008)
Irx5_2385 		0.802 0.842
IRX2
M03212_2.00 		Homo sapiens
NDACAYRACAHN
NDTGTYRTGTHN		 SELEX
Jolma et al.(2013)
IRX2_1 		0.802 0.842
IRX5
M03222_2.00 		Homo sapiens
NDACAYRACAHN
NDTGTYRTGTHN		 SELEX
Jolma et al.(2013)
IRX5_1 		0.802 0.842
IRX5
M05315_2.00 		Homo sapiens
NBDTGTHNDACAYVN
NBRTGTHNDACAHVN		 SELEX
Yin et al.(2017)
IRX5_eDBD_HT-SELEX 		0.802 0.842
IRX5
M05316_2.00 		Homo sapiens
WYRYGHHNHAYRYRY
RYRYRTDNDDCRYRW		 SELEX
Yin et al.(2017)
IRX5_eDBD_Methyl-HT-SELEX 		0.802 0.842
Irx4
M00416_2.00 		Mus musculus
NNNDAMAH
DTKTHNNN		 PBM
Berger et al.(2008)
Irx4_2242 		0.788 0.860
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
TMUE_s0040004400 Homeodomain 169 228

Links

Other Homeodomain family TFs
Other Trichuris muris TFs

387 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
OMERI10G10050 Oryza meridionalis OMERI10G10050 N 0.000
Pavir.J11268 Panicum virgatum Pavir.J11268 N 0.000
Pavir.Ib03261 Panicum virgatum Pavir.Ib03261 N 0.000
Lus10022915.g Linum usitatissimum Lus10022915.g N 0.000
Gorai.004G221300 Gossypium raimondii Gorai.004G221300 N 0.000
Si036835m.g Setaria italica Si036835m.g N 0.000
OS10G0477600 Oryza sativa OS10G0477600 N 0.000
ORUFI10G14000 Oryza rufipogon ORUFI10G14000 N 0.000
OPUNC10G11640 Oryza punctata OPUNC10G11640 N 0.000
ONIVA10G14530 Oryza nivara ONIVA10G14530 N 0.000
BGIOSGA033132 Oryza indica BGIOSGA033132 N 0.000
OGLUM10G13040 Oryza glumaepatula OGLUM10G13040 N 0.000
OBART10G13230 Oryza barthii OBART10G13230 N 0.000
OB0039G10090 Oryza brachyantha OB0039G10090 N 0.000
LPERR10G09740 Leersia perrieri LPERR10G09740 N 0.000
GSMUA_AchrUn_randomG02760_001 Musa acuminata GSMUA_AchrUn_randomG02760_001 N 0.000
GSMUA_Achr5G18670_001 Musa acuminata GSMUA_Achr5G18670_001 N 0.000
GSMUA_Achr1G20530_001 Musa acuminata GSMUA_Achr1G20530_001 N 0.000
GRMZM2G062009 Zea mays GRMZM2G062009 N 0.000
BRADI3G54817 Brachypodium distachyon BRADI3G54817 N 0.000