Cmyd_10004276 (Chelonia mydas)
HSF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00447 (HSF_DNA-bind) IPR000232 Cmyd_10004276 T242600_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HSF2
M03324_2.00 		Homo sapiens
GAANVTTCTAGAA
TTCTAGAABNTTC		 SELEX
Jolma et al.(2013)
HSF2_1 		0.498 0.948
HSF2
M02744_2.00 		Homo sapiens
GAABGTTCTRGA
TCYAGAACVTTC		 SELEX
Jolma et al.(2010)
HSF2_dimertrimer 		0.498 0.948
HSF2
M05505_2.00 		Homo sapiens
VGAABVTTCBVGAWN
NWTCBVGAABVTTCB		 SELEX
Yin et al.(2017)
HSF2_eDBD_HT-SELEX 		0.498 0.948
HSF2
M05507_2.00 		Homo sapiens
VGAANNTTCBVGAAN
NTTCBVGAANNTTCB		 SELEX
Yin et al.(2017)
HSF2_FL_HT-SELEX 		0.498 0.948
HSF2
M09229_2.00 		Homo sapiens
VGAABVTTCKVGAN
NTCBMGAABVTTCB		 Misc
Kulakovskiy et al.(2013)
HSF2_HUMAN.H11MO.0.A 		0.498 0.948
HSF2
M10859_2.00 		Homo sapiens
VGAANNWTCB
VGAWNNTTCB		 Transfac
Matys et al.(2006)
V$HSF2_01 		0.498 0.948
HSF2
M10860_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HSF2_02 		0.498 0.948
HSF2
M10861_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HSF2_Q6 		0.498 0.948
HSF2
M05506_2.00 		Homo sapiens
RGAABVTTCYRGAWN
NWTCYRGAABVTTCY		 SELEX
Yin et al.(2017)
HSF2_eDBD_Methyl-HT-SELEX 		0.498 0.948
HSF2
M05508_2.00 		Homo sapiens
RGAABVTTCYRGAWN
NWTCYRGAABVTTCY		 SELEX
Yin et al.(2017)
HSF2_FL_Methyl-HT-SELEX 		0.498 0.948
Hsf2
M09231_2.00 		Mus musculus
VGAABVTTCKVGAN
NTCBMGAABVTTCB		 Misc
Kulakovskiy et al.(2013)
HSF2_MOUSE.H11MO.0.A 		0.488 0.922
hsf2
M02248_2.00 		Danio rerio
NNNWGTTCTATNN
NNATAGAACWNNN		 PBM
Weirauch et al.(2014)
pTH9010 		0.479 0.883
ANIA_08035
M02247_2.00 		Aspergillus nidulans
NNNNTTCYRN
NYRGAANNNN		 PBM
Weirauch et al.(2014)
pTH8231 		0.335 0.519
hsf-1
M02249_2.00 		Neurospora crassa
NNNTTCBDNN
NNHVGAANNN		 PBM
Weirauch et al.(2014)
pTH8857 		0.324 0.494
For this family, TFs with SR scores > 0.318 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cmyd_10004276 HSF 1 80

Links

Other HSF family TFs
Other Chelonia mydas TFs

215 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
HNAJ_0001249801 Hymenolepis nana HNAJ_0001249801 N 0.000
nRc.2.0.1.g43473 Romanomermis culicivorax nRc.2.0.1.g43473 N 0.000
nLs.2.1.2.g00300 Litomosoides sigmodontis nLs.2.1.2.g00300 N 0.000
NECAME_09126 Necator americanus NECAME_09126 N 0.000
nDi.2.2.2.g04979 Dirofilaria immitis nDi.2.2.2.g04979 N 0.000
NBR_0000911001 Nippostrongylus brasiliensis NBR_0000911001 N 0.000
nAv.1.0.1.g02101 Acanthocheilonema viteae nAv.1.0.1.g02101 N 0.000
MhA1_Contig113.frz3.gene9 Meloidogyne hapla MhA1_Contig113.frz3.gene9 N 0.000
MCOS_0000526101 Mesocestoides corti MCOS_0000526101 N 0.000
L893_g5947 Steinernema glaseri L893_g5947 N 0.000
L892_g17551 Steinernema scapterisci L892_g17551 N 0.000
L889_g13533 Steinernema feltiae L889_g13533 N 0.000
L596_g22130 Steinernema carpocapsae L596_g22130 N 0.000
PEQ_0000150901 Parascaris equorum PEQ_0000150901 N 0.000
HmN_000466000 Hymenolepis microstoma HmN_000466000 N 0.000
HDID_0000237901 Hymenolepis diminuta HDID_0000237901 N 0.000
HCOI00860100 Haemonchus contortus HCOI00860100 N 0.000
Hba_13817 Heterorhabditis bacteriophora Hba_13817 N 0.000
GPUH_0001544201 Gongylonema pulchrum GPUH_0001544201 N 0.000
genemark-nMf.1.1.scaf06964-processed-gene-0.3 Meloidogyne floridensis genemark-nMf.1.1.scaf06964-processed-gene-0.3 N 0.000
EVEC_0000577301 Enterobius vermicularis EVEC_0000577301 N 0.000
EmuJ_001049000 Echinococcus multilocularis EmuJ_001049000 N 0.000
EEL_0000068601 Elaeophora elaphi EEL_0000068601 N 0.000
ECANG7_02036 Echinococcus canadensis ECANG7_02036 N 0.000
DME_0001055201 Dracunculus medinensis DME_0001055201 N 0.000
SSTP_0000371800 Strongyloides stercoralis SSTP_0000371800 N 0.000
TTRE_0000338301 Trichuris trichiura TTRE_0000338301 N 0.000
TTAC_0000225801 Hydatigera taeniaeformis TTAC_0000225801 N 0.000
TsM_000115400 Taenia solium TsM_000115400 N 0.000
TRE_0000506801 Trichobilharzia regenti TRE_0000506801 N 0.000
TMUE_s0235000800 Trichuris muris TMUE_s0235000800 N 0.000
TELCIR_07111 Teladorsagia circumcincta TELCIR_07111 N 0.000
TELCIR_06008 Teladorsagia circumcincta TELCIR_06008 N 0.000
TCNE_0000567001 Toxocara canis TCNE_0000567001 N 0.000
TCLT_0000879501 Thelazia callipaeda TCLT_0000879501 N 0.000
T265_12733 Opisthorchis viverrini T265_12733 N 0.000
SVE_0494300 Strongyloides venezuelensis SVE_0494300 N 0.000
DILT_0001497901 Diphyllobothrium latum DILT_0001497901 N 0.000
SSLN_0000493501 Schistocephalus solidus SSLN_0000493501 N 0.000
SROB_0000153901 Schistosoma rodhaini SROB_0000153901 N 0.000
SPAL_0001030300 Strongyloides papillosus SPAL_0001030300 N 0.000
SMUV_0000232601 Syphacia muris SMUV_0000232601 N 0.000
SMTD_0001194601 Schistosoma mattheei SMTD_0001194601 N 0.000
SCUD_0000020101 Schistosoma curassoni SCUD_0000020101 N 0.000
scaffold580-EXSNAP2012.5 Pristionchus exspectatus scaffold580-EXSNAP2012.5 N 0.000
SBAD_0000405201 Soboliphyme baturini SBAD_0000405201 N 0.000
RSKR_0000605700 Rhabditophanes kr3021 RSKR_0000605700 N 0.000
PXEA_0002175501 Protopolystoma xenopodis PXEA_0002175501 N 0.000
PTRK_0000986200 Parastrongyloides trichosuri PTRK_0000986200 N 0.000
ENSTBEG00000005874 Tupaia belangeri ENSTBEG00000005874 N 0.000
tetur02g08340 Tetranychus urticae tetur02g08340 N 0.000
tetur02g08260 Tetranychus urticae tetur02g08260 N 0.000
Smp_000980 Schistosoma mansoni Smp_000980 N 0.000
SMAR013695 Strigamia maritima SMAR013695 N 0.000
Ppa-hmg-1.2 Pristionchus pacificus PPA02361 N 0.000
PHUM006290 Pediculus humanus PHUM006290 N 0.000
LOAG_04936 Loa loa LOAG_04936 N 0.000
ISCW017350 Ixodes scapularis ISCW017350 N 0.000
HelroG87827 Helobdella robusta HelroG87827 N 0.000
HelroG157878 Helobdella robusta HelroG157878 N 0.000
HelroG157726 Helobdella robusta HelroG157726 N 0.000
hmg-1.2 Caenorhabditis elegans WBGene00001972 N 0.000
EFV57410 Trichinella spiralis EFV57410 N 0.000
CRE02943 Caenorhabditis remanei CRE02943 N 0.000
CJA42049 Caenorhabditis japonica CJA42049 N 0.000
CJA09678 Caenorhabditis japonica CJA09678 N 0.000
CGI_10023724 Crassostrea gigas CGI_10023724 N 0.000
CBN17977 Caenorhabditis brenneri CBN17977 N 0.000
CBG17468 Caenorhabditis briggsae CBG17468 N 0.000
CapteG158220 Capitella teleta CapteG158220 N 0.000
Bm4180 Brugia malayi Bm4180 N 0.000
Aqu1.227714 Amphimedon queenslandica Aqu1.227714 N 0.000
ACYPI007949 Acyrthosiphon pisum ACYPI007949 N 0.000
ACOC_0000768601 Angiostrongylus costaricensis ACOC_0000768601 N 0.000
D918_07195 Trichuris suis D918_07195 N 0.000
D917_08189 Trichinella nativa D917_08189 N 0.000
D917_01254 Trichinella nativa D917_01254 N 0.000
D915_00818 Fasciola hepatica D915_00818 N 0.000
csin112095 Clonorchis sinensis csin112095 N 0.000
BXY_1555400 Bursaphelenchus xylophilus BXY_1555400 N 0.000
augustus_masked-nMf.1.1.scaf01778-processed-gene-0.2 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf01778-processed-gene-0.2 N 0.000
ASU_03902 Ascaris suum ASU_03902 N 0.000
ASIM_0000048401 Anisakis simplex ASIM_0000048401 N 0.000
ANCCEY_10333 Ancylostoma ceylanicum ANCCEY_10333 N 0.000
ANCCAN_10156 Ancylostoma caninum ANCCAN_10156 N 0.000
WUBG_12099 Wuchereria bancrofti WUBG_12099 N 0.000
ACAC_0001052301 Angiostrongylus cantonensis ACAC_0001052301 N 0.000
Minc08988 Meloidogyne incognita Minc08988 N 0.000
Minc03268 Meloidogyne incognita Minc03268 N 0.000
Minc01077 Meloidogyne incognita Minc01077 N 0.000
SMU15030256 Schmidtea mediterranea SMU15030256 N 0.000
Sjc_0031360 Schistosoma japonicum Sjc_0031360 N 0.000
LDEC006842 Leptinotarsa decemlineata LDEC006842 N 0.000
Sakowv30042012m.g Saccoglossus kowalevskii Sakowv30042012m.g N 0.000
fgenesh2_pm.scaffold_24000033 Branchiostoma floridae fgenesh2_pm.scaffold_24000033 N 0.000
YQE_03203 Dendroctonus ponderosae YQE_03203 N 0.000
WBGene00245261 Onchocerca volvulus WBGene00245261 N 0.000