estExt_fgenesh2_pg.C_2160046 (Branchiostoma floridae)
HSF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00447 (HSF_DNA-bind) IPR000232 estExt_fgenesh2_pg.C_2160046 T242825_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HSF5
M05519_2.00 		Homo sapiens
NRCRTTCTAGAACGYN
NRCGTTCTAGAAYGYN		 SELEX
Yin et al.(2017)
HSF5_eDBD_HT-SELEX_1 		0.324 0.452
HSF5
M05520_2.00 		Homo sapiens
YVGAAYRYNNNNNNNNNBHACRTTCBR
YVGAAYGTDVNNNNNNNNNRYRTTCBR		 SELEX
Yin et al.(2017)
HSF5_eDBD_HT-SELEX_2 		0.324 0.452
HSF5
M05521_2.00 		Homo sapiens
AACRTTCTAGAAYGTT
AACRTTCTAGAAYGTT		 SELEX
Yin et al.(2017)
HSF5_eDBD_Methyl-HT-SELEX_1 		0.324 0.452
HSF5
M05522_2.00 		Homo sapiens
YRGAAYDYNVNNNNNNNBAACRTTCYR
YRGAAYGTTVNNNNNNNBNRHRTTCYR		 SELEX
Yin et al.(2017)
HSF5_eDBD_Methyl-HT-SELEX_2 		0.324 0.452
For this family, TFs with SR scores > 0.318 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
estExt_fgenesh2_pg.C_2160046 HSF 53 153

Links

Other HSF family TFs
Other Branchiostoma floridae TFs

5 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SPL8 Arabidopsis thaliana AT1G02065 D 0.000
fgenesh1_pg.scaffold_194000034 Physcomitrella patens fgenesh1_pg.scaffold_194000034 D 0.000
fgenesh1_pg.scaffold_252000020 Physcomitrella patens fgenesh1_pg.scaffold_252000020 D 0.000
AMTR_s00019p00235390 Amborella trichopoda AMTR_s00019p00235390 I 0.000
AMTR_s00047p00197010 Amborella trichopoda AMTR_s00047p00197010 I 0.000
BGIOSGA007655 Oryza indica BGIOSGA007655 I 0.000
BGIOSGA016888 Oryza indica BGIOSGA016888 I 0.000
BGIOSGA017275 Oryza indica BGIOSGA017275 I 0.000
Bo3g042890 Brassica oleracea Bo3g042890 I 0.000
Bo5g001290 Brassica oleracea Bo5g001290 I 0.000
Bo6g031220 Brassica oleracea Bo6g031220 I 0.000
Bo8g118210 Brassica oleracea Bo8g118210 I 0.000
Bra032662 Brassica rapa Bra032662 I 0.000
Bra033221 Brassica rapa Bra033221 I 0.000
Bra039656 Brassica rapa Bra039656 I 0.000
BRADI5G24670 Brachypodium distachyon BRADI5G24670 I 0.000
SPL8 Arabidopsis lyrata fgenesh2_kg.1__23__AT1G02065.1 I 0.000
GLYMA0005S50 Glycine max GLYMA0005S50 I 0.000
GLYMA01G15258 Glycine max GLYMA01G15258 I 0.000
GLYMA03G27180 Glycine max GLYMA03G27180 I 0.000
GLYMA04G32002 Glycine max GLYMA04G32002 I 0.000
GLYMA07G14610 Glycine max GLYMA07G14610 I 0.000
GLYMA17G08840 Glycine max GLYMA17G08840 I 0.000
GRMZM2G036297 Zea mays GRMZM2G036297 I 0.000
GRMZM2G058588 Zea mays GRMZM2G058588 I 0.000
GSMUA_Achr10G06210_001 Musa acuminata GSMUA_Achr10G06210_001 I 0.000
GSMUA_Achr2G03070_001 Musa acuminata GSMUA_Achr2G03070_001 I 0.000
GSMUA_Achr2G11940_001 Musa acuminata GSMUA_Achr2G11940_001 I 0.000
GSMUA_Achr3G00810_001 Musa acuminata GSMUA_Achr3G00810_001 I 0.000
GSMUA_Achr4G20590_001 Musa acuminata GSMUA_Achr4G20590_001 I 0.000
GSMUA_Achr4G24610_001 Musa acuminata GSMUA_Achr4G24610_001 I 0.000
GSMUA_Achr4G28960_001 Musa acuminata GSMUA_Achr4G28960_001 I 0.000
GSMUA_Achr7G05010_001 Musa acuminata GSMUA_Achr7G05010_001 I 0.000
GSMUA_Achr7G08750_001 Musa acuminata GSMUA_Achr7G08750_001 I 0.000
LPERR02G05080 Leersia perrieri LPERR02G05080 I 0.000
LPERR04G17030 Leersia perrieri LPERR04G17030 I 0.000
LPERR04G23580 Leersia perrieri LPERR04G23580 I 0.000
MLOC_57503 Hordeum vulgare MLOC_57503 I 0.000
MTR_2g461920 Medicago truncatula MTR_2g461920 I 0.000
MTR_4g109770 Medicago truncatula MTR_4g109770 I 0.000
MTR_8g005960 Medicago truncatula MTR_8g005960 I 0.000
OB02G15090 Oryza brachyantha OB02G15090 I 0.000
OB04G27960 Oryza brachyantha OB04G27960 I 0.000
OB04G34990 Oryza brachyantha OB04G34990 I 0.000
OBART04G20940 Oryza barthii OBART04G20940 I 0.000
OBART04G27990 Oryza barthii OBART04G27990 I 0.000
OGLUM04G20870 Oryza glumaepatula OGLUM04G20870 I 0.000
OGLUM04G27880 Oryza glumaepatula OGLUM04G27880 I 0.000
OLONG_021174 Oryza longistaminata OLONG_021174 I 0.000
OMERI02G06720 Oryza meridionalis OMERI02G06720 I 0.000
OMERI04G17360 Oryza meridionalis OMERI04G17360 I 0.000
OMERI04G23390 Oryza meridionalis OMERI04G23390 I 0.000
ONIVA04G19190 Oryza nivara ONIVA04G19190 I 0.000
ONIVA04G26660 Oryza nivara ONIVA04G26660 I 0.000
OPUNC04G18620 Oryza punctata OPUNC04G18620 I 0.000
OPUNC04G25460 Oryza punctata OPUNC04G25460 I 0.000
ORGLA02G0053800 Oryza glaberrima ORGLA02G0053800 I 0.000
ORGLA04G0180000 Oryza glaberrima ORGLA04G0180000 I 0.000
ORGLA04G0242500 Oryza glaberrima ORGLA04G0242500 I 0.000
ORUFI04G22540 Oryza rufipogon ORUFI04G22540 I 0.000
ORUFI04G29620 Oryza rufipogon ORUFI04G29620 I 0.000
SPL5 Oryza sativa OS02G0177300 I 0.000
SPL7 Oryza sativa OS04G0551500 I 0.000
SPL8 Oryza sativa OS04G0656500 I 0.000
PGSC0003DMG400021902 Solanum tuberosum PGSC0003DMG400021902 I 0.000
PGSC0003DMG400023260 Solanum tuberosum PGSC0003DMG400023260 I 0.000
PGSC0003DMG400024527 Solanum tuberosum PGSC0003DMG400024527 I 0.000
PGSC0003DMG400026027 Solanum tuberosum PGSC0003DMG400026027 I 0.000
PGSC0003DMG400029162 Solanum tuberosum PGSC0003DMG400029162 I 0.000
POPTR_0002s14320 Populus trichocarpa POPTR_0002s14320 I 0.000
POPTR_0008s09750 Populus trichocarpa POPTR_0008s09750 I 0.000
POPTR_0010s16400 Populus trichocarpa POPTR_0010s16400 I 0.000
POPTR_0014s05680 Populus trichocarpa POPTR_0014s05680 I 0.000
POPTR_0015s07140 Populus trichocarpa POPTR_0015s07140 I 0.000
PRUPE_ppa003644mg Prunus persica PRUPE_ppa003644mg I 0.000
PRUPE_ppa008560mg Prunus persica PRUPE_ppa008560mg I 0.000
PRUPE_ppa011968mg Prunus persica PRUPE_ppa011968mg I 0.000
Sb06g031290 Sorghum bicolor Sb06g031290 I 0.000
SELMODRAFT_17706 Selaginella moellendorffii SELMODRAFT_17706 I 0.000
SELMODRAFT_17777 Selaginella moellendorffii SELMODRAFT_17777 I 0.000
SELMODRAFT_28629 Selaginella moellendorffii SELMODRAFT_28629 I 0.000
SELMODRAFT_49502 Selaginella moellendorffii SELMODRAFT_49502 I 0.000
SELMODRAFT_59543 Selaginella moellendorffii SELMODRAFT_59543 I 0.000
SELMODRAFT_59884 Selaginella moellendorffii SELMODRAFT_59884 I 0.000
SELMODRAFT_7674 Selaginella moellendorffii SELMODRAFT_7674 I 0.000
Si022315m.g Setaria italica Si022315m.g I 0.000
Si032170m.g Setaria italica Si032170m.g I 0.000
Solyc01g090730.2 Solanum lycopersicum Solyc01g090730.2 I 0.000
Solyc03g114850.2 Solanum lycopersicum Solyc03g114850.2 I 0.000
Solyc05g015840.2 Solanum lycopersicum Solyc05g015840.2 I 0.000
Solyc10g009080.2 Solanum lycopersicum Solyc10g009080.2 I 0.000
Solyc10g018780.1 Solanum lycopersicum Solyc10g018780.1 I 0.000
Solyc12g038520.1 Solanum lycopersicum Solyc12g038520.1 I 0.000
TCM_005622 Theobroma cacao TCM_005622 I 0.000
TCM_011483 Theobroma cacao TCM_011483 I 0.000
TCM_014330 Theobroma cacao TCM_014330 I 0.000
TRIUR3_34351 Triticum urartu TRIUR3_34351 I 0.000
VIT_01s0011g00130 Vitis vinifera VIT_01s0011g00130 I 0.000
SPL8 Vitis vinifera VIT_15s0021g02300 I 0.000
VIT_17s0000g05020 Vitis vinifera VIT_17s0000g05020 I 0.000
Ca_18942 Cicer arietinum Ca_18942 I 0.000
Ca_19449 Cicer arietinum Ca_19449 I 0.000
Cla001541 Citrullus lanatus Cla001541 I 0.000
Cla006776 Citrullus lanatus Cla006776 I 0.000
Cla018827 Citrullus lanatus Cla018827 I 0.000
Cla019331 Citrullus lanatus Cla019331 I 0.000
Pm014154 Prunus mume Pm014154 I 0.000
Pm017777 Prunus mume Pm017777 I 0.000
Pm025028 Prunus mume Pm025028 I 0.000
30138.m003942 Ricinus communis 30138.m003942 I 0.000
30174.m008803 Ricinus communis 30174.m008803 I 0.000
30174.m009082 Ricinus communis 30174.m009082 I 0.000
cassava13944.valid.m1 Manihot esculenta cassava13944.valid.m1 I 0.000
cassava19899.m1 Manihot esculenta cassava19899.m1 I 0.000
cassava37839.valid.m1 Manihot esculenta cassava37839.valid.m1 I 0.000
cassava39122.m1 Manihot esculenta cassava39122.m1 I 0.000
cassava43385.valid.m1 Manihot esculenta cassava43385.valid.m1 I 0.000
cassava7440.valid.m1 Manihot esculenta cassava7440.valid.m1 I 0.000
Cucsa.113410 Cucumis sativus Cucsa.113410 I 0.000
Cucsa.120620 Cucumis sativus Cucsa.120620 I 0.000
Cucsa.198630 Cucumis sativus Cucsa.198630 I 0.000
Cucsa.349620 Cucumis sativus Cucsa.349620 I 0.000
fgenesh1_pg.scaffold_118000004 Physcomitrella patens fgenesh1_pg.scaffold_118000004 I 0.000
fgenesh1_pg.scaffold_23000047 Physcomitrella patens fgenesh1_pg.scaffold_23000047 I 0.000
fgenesh1_pg.scaffold_337000032 Physcomitrella patens fgenesh1_pg.scaffold_337000032 I 0.000
fgenesh1_pg.scaffold_50000085 Physcomitrella patens fgenesh1_pg.scaffold_50000085 I 0.000
mgf002455m Mimulus guttatus mgf002455m I 0.000
mgf016085m Mimulus guttatus mgf016085m I 0.000
Aquca_002_00889 Aquilegia coerulea Aquca_002_00889 I 0.000
Aquca_024_00116 Aquilegia coerulea Aquca_024_00116 I 0.000
Bostr.5325s0127 Boechera stricta Bostr.5325s0127 I 0.000
Cagra.1968s0141 Capsella grandiflora Cagra.1968s0141 I 0.000
Carubv10009506m.g Capsella rubella Carubv10009506m.g I 0.000
Ciclev10019546m.g Citrus clementina Ciclev10019546m.g I 0.000
Ciclev10021106m.g Citrus clementina Ciclev10021106m.g I 0.000
Eucgr.B00631 Eucalyptus grandis Eucgr.B00631 I 0.000
Eucgr.B03518 Eucalyptus grandis Eucgr.B03518 I 0.000
Eucgr.E01600 Eucalyptus grandis Eucgr.E01600 I 0.000
Eucgr.K02545 Eucalyptus grandis Eucgr.K02545 I 0.000
evm.TU.supercontig_149.10 Carica papaya evm.TU.supercontig_149.10 I 0.000
evm.TU.supercontig_2783.1 Carica papaya evm.TU.supercontig_2783.1 I 0.000
gene04786-v1.0-hybrid Fragaria vesca gene04786-v1.0-hybrid I 0.000
gene26117-v1.0-hybrid Fragaria vesca gene26117-v1.0-hybrid I 0.000
Gorai.001G176000 Gossypium raimondii Gorai.001G176000 I 0.000
Gorai.003G102800 Gossypium raimondii Gorai.003G102800 I 0.000
Gorai.004G047200 Gossypium raimondii Gorai.004G047200 I 0.000
Gorai.007G116100 Gossypium raimondii Gorai.007G116100 I 0.000
Gorai.008G107400 Gossypium raimondii Gorai.008G107400 I 0.000
Lus10000643.g Linum usitatissimum Lus10000643.g I 0.000
Lus10007984.g Linum usitatissimum Lus10007984.g I 0.000
Lus10013999.g Linum usitatissimum Lus10013999.g I 0.000
Lus10015421.g Linum usitatissimum Lus10015421.g I 0.000
Lus10021141.g Linum usitatissimum Lus10021141.g I 0.000
Lus10028181.g Linum usitatissimum Lus10028181.g I 0.000
Lus10036812.g Linum usitatissimum Lus10036812.g I 0.000
Lus10042882.g Linum usitatissimum Lus10042882.g I 0.000
MDP0000146640 Malus domestica MDP0000146640 I 0.000
MDP0000778465 Malus domestica MDP0000778465 I 0.000
MDP0000803116 Malus domestica MDP0000803116 I 0.000
orange1.1g008680m.g Citrus sinensis orange1.1g008680m.g I 0.000
orange1.1g020302m.g Citrus sinensis orange1.1g020302m.g I 0.000
Pavir.Ab00520 Panicum virgatum Pavir.Ab00520 I 0.000
Pavir.Ga00066 Panicum virgatum Pavir.Ga00066 I 0.000
Pavir.Ga01083 Panicum virgatum Pavir.Ga01083 I 0.000
Pavir.Gb00284 Panicum virgatum Pavir.Gb00284 I 0.000
SapurV1A.0033s0300 Salix purpurea SapurV1A.0033s0300 I 0.000
SapurV1A.0072s0340 Salix purpurea SapurV1A.0072s0340 I 0.000
SapurV1A.0176s0470 Salix purpurea SapurV1A.0176s0470 I 0.000
SapurV1A.0382s0100 Salix purpurea SapurV1A.0382s0100 I 0.000
Thhalv10008083m.g Eutrema salsugineum Thhalv10008083m.g I 0.000
PK17790.1 Cannabis sativa PK17790.1 I 0.000
PK25779.1 Cannabis sativa PK25779.1 I 0.000