ENSFALG00000000504 (Ficedula albicollis)
IRF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00605 (IRF) IPR001346 ENSFALG00000000504 T244060_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
IRF6
M02254_2.00 		Meleagris gallopavo
NRNCGAWACY
RGTWTCGNYN		 PBM
Weirauch et al.(2014)
pTH9210 		0.965 0.965
IRF6
M02253_2.00 		Gallus gallus
NNMCNAAWNN
NNWTTNGKNN		 PBM
Weirauch et al.(2014)
pTH9178 		0.947 0.947
Irf6
M00176_2.00 		Mus musculus
NNNHGADASN
NSTHTCDNNN		 PBM
Badis et al.(2009)
Irf6_3803 		0.930 0.930
IRF6
M05527_2.00 		Homo sapiens
RGTWTCGNNNNNNYGAWACY
RGTWTCRNNNNNNCGAWACY		 SELEX
Yin et al.(2017)
IRF6_eDBD_HT-SELEX 		0.930 0.930
IRF6
M05529_2.00 		Homo sapiens
ACCGAAACT
AGTTTCGGT		 SELEX
Yin et al.(2017)
IRF6_FL_HT-SELEX 		0.930 0.930
IRF6
M05528_2.00 		Homo sapiens
RGTWTCGNHNNDNYGAWACY
RGTWTCRNHNNDNCGAWACY		 SELEX
Yin et al.(2017)
IRF6_eDBD_Methyl-HT-SELEX 		0.930 0.930
IRF6
M05530_2.00 		Homo sapiens
ACCGAWACY
RGTWTCGGT		 SELEX
Yin et al.(2017)
IRF6_FL_Methyl-HT-SELEX 		0.930 0.930
irf6.2
M02259_2.00 		Xenopus tropicalis
NVNHGAWACH
DGTWTCDNBN		 PBM
Weirauch et al.(2014)
pTH9302 		0.912 0.912
irf5.L
M02260_2.00 		Xenopus laevis
VNCGADACHN
NDGTHTCGNB		 PBM
Weirauch et al.(2014)
pTH9367 		0.825 0.825
Irf5
M00177_2.00 		Mus musculus
NNNHGADASH
DSTHTCDNNN		 PBM
Badis et al.(2009)
Irf5_3874 		0.737 0.737
IRF5
M02256_2.00 		Oryctolagus cuniculus
NHCGAAACYN
NRGTTTCGDN		 PBM
Weirauch et al.(2014)
pTH9272 		0.737 0.737
IRF5
M03332_2.00 		Homo sapiens
YCGAAACCGAAMCY
RGKTTCGGTTTCGR		 SELEX
Jolma et al.(2013)
IRF5_1 		0.737 0.737
IRF5
M03333_2.00 		Homo sapiens
HACCGAAACYV
BRGTTTCGGTD		 SELEX
Jolma et al.(2013)
IRF5_2 		0.737 0.737
IRF5
M05535_2.00 		Homo sapiens
NCGAAACCGAWACH
DGTWTCGGTTTCGN		 SELEX
Yin et al.(2017)
IRF5_eDBD_HT-SELEX 		0.737 0.737
IRF5
M05537_2.00 		Homo sapiens
NCGAAACCGAAACY
RGTTTCGGTTTCGN		 SELEX
Yin et al.(2017)
IRF5_FL_HT-SELEX 		0.737 0.737
IRF5
M10884_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF5_Q3 		0.737 0.737
IRF5
M05536_2.00 		Homo sapiens
NYGAWACYGAWACH
DGTWTCRGTWTCRN		 SELEX
Yin et al.(2017)
IRF5_eDBD_Methyl-HT-SELEX 		0.737 0.737
IRF5
M05538_2.00 		Homo sapiens
NYGAAACCGAWACY
RGTWTCGGTTTCRN		 SELEX
Yin et al.(2017)
IRF5_FL_Methyl-HT-SELEX 		0.737 0.737
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSFALP00000000519 IRF 1 57

Links

Other IRF family TFs
Other Ficedula albicollis TFs

31 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
OESDEN_21968 Oesophagostomum dentatum OESDEN_21968 N
L596_g19795 Steinernema carpocapsae L596_g19795 N
L889_g2315 Steinernema feltiae L889_g2315 N
L892_g26146 Steinernema scapterisci L892_g26146 N
L893_g25152 Steinernema glaseri L893_g25152 N
L898_g34435 Steinernema monticolum L898_g34435 N
maker-nMf.1.1.scaf23008-snap-gene-0.4 Meloidogyne floridensis maker-nMf.1.1.scaf23008-snap-gene-0.4 N
MhA1_Contig3017.frz3.gene1 Meloidogyne hapla MhA1_Contig3017.frz3.gene1 N
nAv.1.0.1.g02967 Acanthocheilonema viteae nAv.1.0.1.g02967 N
NBR_0000074101 Nippostrongylus brasiliensis NBR_0000074101 N
nDi.2.2.2.g01958 Dirofilaria immitis nDi.2.2.2.g01958 N
nLs.2.1.2.g00565 Litomosoides sigmodontis nLs.2.1.2.g00565 N
OESDEN_08787 Oesophagostomum dentatum OESDEN_08787 N
HPBE_0002612401 Heligmosomoides bakeri HPBE_0002612401 N
OFLC_0001268901 Onchocerca flexuosa OFLC_0001268901 N
PTRK_0001365600 Parastrongyloides trichosuri PTRK_0001365600 N
RSKR_0001024700 Rhabditophanes kr3021 RSKR_0001024700 N
SMUV_0000066701 Syphacia muris SMUV_0000066701 N
SPAL_0000486600 Strongyloides papillosus SPAL_0000486600 N
SSTP_0000566900 Strongyloides stercoralis SSTP_0000566900 N
SVE_0169500 Strongyloides venezuelensis SVE_0169500 N
SVUK_0000275901 Strongylus vulgaris SVUK_0000275901 N
TCLT_0000269001 Thelazia callipaeda TCLT_0000269001 N
TCNE_0000831801 Toxocara canis TCNE_0000831801 N
TELCIR_08200 Teladorsagia circumcincta TELCIR_08200 N
ANCCAN_05450 Ancylostoma caninum ANCCAN_05450 N
Bm4333 Brugia malayi Bm4333 N
CBG22107 Caenorhabditis briggsae CBG22107 N
CBN30232 Caenorhabditis brenneri CBN30232 N
CBN30270 Caenorhabditis brenneri CBN30270 N
CJA08191 Caenorhabditis japonica CJA08191 N
CRE03949 Caenorhabditis remanei CRE03949 N
LOAG_08456 Loa loa LOAG_08456 N
Ppa-hmbx-1 Pristionchus pacificus PPA23312 N
hmbx-1 Caenorhabditis elegans WBGene00018786 N
WBGene00237307 Onchocerca volvulus WBGene00237307 N
ALUE_0000619901 Ascaris lumbricoides ALUE_0000619901 N
WUBG_01272 Wuchereria bancrofti WUBG_01272 N
ANCDUO_15741 Ancylostoma duodenale ANCDUO_15741 N
ASU_13766 Ascaris suum ASU_13766 N
BTMF_0000486301 Brugia timori BTMF_0000486301 N
BXY_0672000 Bursaphelenchus xylophilus BXY_0672000 N
DICVIV_09346 Dictyocaulus viviparus DICVIV_09346 N
DME_0000931601 Dracunculus medinensis DME_0000931601 N
EEL_0000684201 Elaeophora elaphi EEL_0000684201 N
EVEC_0001364401 Enterobius vermicularis EVEC_0001364401 N
GPLIN_000440300 Globodera pallida GPLIN_000440300 N
GPUH_0001663001 Gongylonema pulchrum GPUH_0001663001 N
Hba_11200 Heterorhabditis bacteriophora Hba_11200 N