Gfo_R010481 (Geospiza fortis)
IRF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00605 (IRF) IPR001346 Gfo_R010481 T244551_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
IRF2
M05545_2.00 		Homo sapiens
NGAAAVYGAAAS
STTTCRBTTTCN		 SELEX
Yin et al.(2017)
IRF2_FL_HT-SELEX 		0.971 0.971
IRF2
M02691_2.00 		Homo sapiens
SGAAAGYGAAASYNWWHH
DDWWNRSTTTCRCTTTCS		 SELEX
Mathelier et al.(2014)
MA0051.1 		0.971 0.971
IRF2
M09237_2.00 		Homo sapiens
NRAANNGAAASYGAAASYRV
BYRSTTTCRSTTTCNNTTYN		 Misc
Kulakovskiy et al.(2013)
IRF2_HUMAN.H11MO.0.A 		0.971 0.971
IRF2
M09596_2.00 		Homo sapiens
NRAAVNRRAASB
VSTTYYNBTTYN		 Misc
Heinz et al.(2010)
Erythroblas-IRF2_GSE36985 		0.971 0.971
IRF2
M10892_2.00 		Homo sapiens
GAAAAGYGAAASY
RSTTTCRCTTTTC		 Transfac
Matys et al.(2006)
V$IRF2_01 		0.971 0.971
IRF2
M10893_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF2_Q6 		0.971 0.971
IRF2
M05546_2.00 		Homo sapiens
NGAAASYGAAAS
STTTCRSTTTCN		 SELEX
Yin et al.(2017)
IRF2_FL_Methyl-HT-SELEX 		0.971 0.971
Irf2
M00805_2.00 		Mus musculus
NDWNHGAAAV
BTTTCDNWHN		 PBM
Weirauch et al.(2013)
pTH2835 		0.952 0.952
Irf2
M09245_2.00 		Mus musculus
NRAANNGAAASYGAAASYRV
BYRSTTTCRSTTTCNNTTYN		 Misc
Kulakovskiy et al.(2013)
IRF2_MOUSE.H11MO.0.B 		0.952 0.952
IRF1
M08142_2.00 		Homo sapiens
RWANNGAAASYGAAASYRNNN
NNNYRSTTTCRSTTTCNNTWY		 ChIP-seq
Mathelier et al.(2014)
MA0050.2 		0.781 0.781
IRF1
M09233_2.00 		Homo sapiens
NRAANNGAAASWGAAASHRN
NYDSTTTCWSTTTCNNTTYN		 Misc
Kulakovskiy et al.(2013)
IRF1_HUMAN.H11MO.0.A 		0.781 0.781
Irf1
M09242_2.00 		Mus musculus
VRAANNGAAASYGAAASYVN
NBRSTTTCRSTTTCNNTTYB		 Misc
Kulakovskiy et al.(2013)
IRF1_MOUSE.H11MO.0.A 		0.781 0.781
IRF1
M09594_2.00 		Homo sapiens
GAAASTGAAASY
RSTTTCASTTTC		 Misc
Heinz et al.(2010)
PBMC-IRF1_GSE43036 		0.781 0.781
IRF1
M10879_2.00 		Homo sapiens
SAAAASYGAAASY
RSTTTCRSTTTTS		 Transfac
Matys et al.(2006)
V$IRF1_01 		0.781 0.781
IRF1
M10880_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF1_03 		0.781 0.781
IRF1
M10881_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF1_Q5 		0.781 0.781
IRF1
M10882_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF1_Q6 		0.781 0.781
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R010481 IRF 7 112

Links

Other IRF family TFs
Other Geospiza fortis TFs

137 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACUA005902 Anopheles culicifacies ACUA005902 N
MCINX012394 Melitaea cinxia MCINX012394 N
PHUM557470 Pediculus humanus PHUM557470 N
SMAR011242 Strigamia maritima SMAR011242 N
CLEC001798 Cimex lectularius CLEC001798 N
AARA002486 Anopheles arabiensis AARA002486 N
AARA005758 Anopheles arabiensis AARA005758 N
AATE015678 Anopheles atroparvus AATE015678 N
ACHR004018 Anopheles christyi ACHR004018 N
ACOM038889 Anopheles coluzzii ACOM038889 N
L798_09133 Zootermopsis nevadensis L798_09133 N
ADIR006881 Anopheles dirus ADIR006881 N
AEPI006428 Anopheles epiroticus AEPI006428 N
AFAF017710 Anopheles farauti AFAF017710 N
AFUN004869 Anopheles funestus AFUN004869 N
AMEC008000 Anopheles melas AMEC008000 N
AQUA011221 Anopheles quadriannulatus AQUA011221 N
ASTEI02235 Anopheles stephensi ASTEI02235 N
LLOJ008378 Lutzomyia longipalpis LLOJ008378 N
MDOA012898 Musca domestica MDOA012898 N
GH16224 Drosophila grimshawi FBgn0123695 N
AAEL009235 Aedes aegypti AAEL009235 N
ADAC007661 Anopheles darlingi ADAC007661 N
AGAP005641 Anopheles gambiae AGAP005641 N
BGIBMGA005287 Bombyx mori BGIBMGA005287 N
CPIJ008535 Culex quinquefasciatus CPIJ008535 N
CG9705 Drosophila melanogaster FBgn0036661 N
GA21978 Drosophila pseudoobscura FBgn0081963 N
GF23931 Drosophila ananassae FBgn0100925 N
GG13577 Drosophila erecta FBgn0105847 N
CpipJ_CPIJ008535 Culex pipiens CpipJ_CPIJ008535 N
GI13370 Drosophila mojavensis FBgn0136127 N
GL20690 Drosophila persimilis FBgn0158285 N
GM25657 Drosophila sechellia FBgn0180514 N
GD14664 Drosophila simulans FBgn0186342 N
GJ13199 Drosophila virilis FBgn0200425 N
GK16809 Drosophila willistoni FBgn0218809 N
GE19874 Drosophila yakuba FBgn0237204 N
HMEL015309 Heliconius melpomene HMEL015309 N
KGM_10424 Danaus plexippus KGM_10424 N