Bra019619 (Brassica rapa)
Leafy

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF01698 (FLO_LFY) IPR002910 Bra019619 T244689_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LFY
M02692_2.00 		Arabidopsis thaliana
YWTKRACCRSYGGTYMAWR
YWTKRACCRSYGGTYMAWR		 SELEX
Mathelier et al.(2014)
MA0590.1 		0.964 0.964
LFY
M10895_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$LFY_Q2 		0.964 0.964
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra019619.1-P Leafy 1 390

Links

Other Leafy family TFs
Other Brassica rapa TFs

65 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
LFY Arabidopsis thaliana AT5G61850 D 0.964
cassava40548.m1 Manihot esculenta cassava40548.m1 I 0.887
Carubv10028602m.g Capsella rubella Carubv10028602m.g I 0.952
Cagra.4553s0022 Capsella grandiflora Cagra.4553s0022 I 0.952
Bostr.26833s0050 Boechera stricta Bostr.26833s0050 I 0.946
Aquca_043_00044 Aquilegia coerulea Aquca_043_00044 I 0.768
mgf020579m Mimulus guttatus mgf020579m I 0.845
mgf013601m Mimulus guttatus mgf013601m I 0.881
estExt_fgenesh1_pg.C_740147 Physcomitrella patens estExt_fgenesh1_pg.C_740147 I 0.702
Cucsa.156880 Cucumis sativus Cucsa.156880 I 0.851
Eucgr.K02192 Eucalyptus grandis Eucgr.K02192 I 0.821
cassava19992.m1 Manihot esculenta cassava19992.m1 I 0.875
30147.m014401 Ricinus communis 30147.m014401 I 0.875
Pm024610 Prunus mume Pm024610 I 0.724
Cla019619 Citrullus lanatus Cla019619 I 0.851
Ca_01386 Cicer arietinum Ca_01386 I 0.887
LFY Vitis vinifera VIT_17s0000g00150 I 0.857
Ciclev10033942m.g Citrus clementina Ciclev10033942m.g I 0.875
Traes_2AL_83D0D0C3F Triticum aestivum Traes_2AL_83D0D0C3F I 0.792
evm.TU.supercontig_13.181 Carica papaya evm.TU.supercontig_13.181 I 0.709
gene30683-v1.0-hybrid Fragaria vesca gene30683-v1.0-hybrid I 0.768
gene30747-v1.0-hybrid Fragaria vesca gene30747-v1.0-hybrid I 0.726
gene30750-v1.0-hybrid Fragaria vesca gene30750-v1.0-hybrid I 0.744
gene33406-v1.0-hybrid Fragaria vesca gene33406-v1.0-hybrid I 0.815
Gorai.001G053900 Gossypium raimondii Gorai.001G053900 I 0.887
Lus10016732.g Linum usitatissimum Lus10016732.g I 0.863
Lus10022427.g Linum usitatissimum Lus10022427.g I 0.857
orange1.1g044766m.g Citrus sinensis orange1.1g044766m.g I 0.875
Pavir.Ga00621 Panicum virgatum Pavir.Ga00621 I 0.810
Pavir.Gb00795 Panicum virgatum Pavir.Gb00795 I 0.810
SapurV1A.2394s0010 Salix purpurea SapurV1A.2394s0010 I 0.851
Thhalv10005606m.g Eutrema salsugineum Thhalv10005606m.g I 0.958
chr1.CM0094.750.nd Lotus japonicus chr1.CM0094.750.nd I 0.902
OGLUM04G23830 Oryza glumaepatula OGLUM04G23830 I 0.798
AMTR_s00016p00083040 Amborella trichopoda AMTR_s00016p00083040 I 0.768
OSL Oryza indica BGIOSGA014428 I 0.798
Bo2g161690 Brassica oleracea Bo2g161690 I 0.940
Bo3g109270 Brassica oleracea Bo3g109270 I 0.994
Bra029305 Brassica rapa Bra029305 I 0.940
BRADI5G20340 Brachypodium distachyon BRADI5G20340 I 0.780
GLYMA04G37900 Glycine max GLYMA04G37900 I 0.817
GLYMA06G17170 Glycine max GLYMA06G17170 I 0.881
GRMZM2G098813 Zea mays GRMZM2G098813 I 0.792
GRMZM2G180190 Zea mays GRMZM2G180190 I 0.804
GSMUA_Achr6G16390_001 Musa acuminata GSMUA_Achr6G16390_001 I 0.845
LPERR04G19570 Leersia perrieri LPERR04G19570 I 0.744
MTR_3g098560 Medicago truncatula MTR_3g098560 I 0.869
OB04G30790 Oryza brachyantha OB04G30790 I 0.792
OBART04G23870 Oryza barthii OBART04G23870 I 0.798
Traes_2BL_8DEC0EFBF Triticum aestivum Traes_2BL_8DEC0EFBF I 0.792
OLONG_021167 Oryza longistaminata OLONG_021167 I 0.798
OMERI04G19760 Oryza meridionalis OMERI04G19760 I 0.798
ONIVA04G23030 Oryza nivara ONIVA04G23030 I 0.798
OPUNC04G21410 Oryza punctata OPUNC04G21410 I 0.798
ORGLA04G0204600 Oryza glaberrima ORGLA04G0204600 I 0.798
ORUFI04G25610 Oryza rufipogon ORUFI04G25610 I 0.798
FL Oryza sativa OS04G0598300 I 0.798
FL Populus trichocarpa POPTR_0015s11820 I 0.851
PRUPE_ppa006372mg Prunus persica PRUPE_ppa006372mg I 0.857
Sb06g027340 Sorghum bicolor Sb06g027340 I 0.815
SELMODRAFT_85923 Selaginella moellendorffii SELMODRAFT_85923 I 0.716
Si011756m.g Setaria italica Si011756m.g I 0.805
Solyc03g118160.1 Solanum lycopersicum Solyc03g118160.1 I 0.875
TCM_014768 Theobroma cacao TCM_014768 I 0.887
LFY Arabidopsis lyrata Al_scaffold_0008_2690 I 0.952