Bra007385 (Brassica rapa)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 Bra007385 T245037_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Bra007385.1-P LOB 13 112

Links

Other LOB family TFs
Other Brassica rapa TFs

168 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AC149818.2_FG009 Zea mays AC149818.2_FG009 I 0.758
LBD29 Arabidopsis thaliana AT3G58190 I 0.929
BGIOSGA005344 Oryza indica BGIOSGA005344 I 0.727
BGIOSGA011118 Oryza indica BGIOSGA011118 I 0.707
BGIOSGA011445 Oryza indica BGIOSGA011445 I 0.798
BGIOSGA026473 Oryza indica BGIOSGA026473 I 0.828
Bo4g016000 Brassica oleracea Bo4g016000 I 0.707
Bo4g108600 Brassica oleracea Bo4g108600 I 0.909
Bo4g191530 Brassica oleracea Bo4g191530 I 0.707
Bo8g092560 Brassica oleracea Bo8g092560 I 0.960
Bra004693 Brassica rapa Bra004693 I 0.707
Bra014581 Brassica rapa Bra014581 I 0.909
BRADI1G68170 Brachypodium distachyon BRADI1G68170 I 0.707
BRADI1G75110 Brachypodium distachyon BRADI1G75110 I 0.778
BRADI3G12550 Brachypodium distachyon BRADI3G12550 I 0.798
F775_02052 Aegilops tauschii F775_02052 I 0.798
F775_22967 Aegilops tauschii F775_22967 I 0.808
LBD29 Arabidopsis lyrata fgenesh2_kg.5__2263__AT3G58190.1 I 0.919
GLYMA03G31860 Glycine max GLYMA03G31860 I 0.808
GLYMA10G04050 Glycine max GLYMA10G04050 I 0.848
GLYMA13G18210 Glycine max GLYMA13G18210 I 0.859
GLYMA19G30200 Glycine max GLYMA19G30200 I 0.707
GLYMA19G34600 Glycine max GLYMA19G34600 I 0.808
GRMZM2G075499 Zea mays GRMZM2G075499 I 0.737
GRMZM2G092542 Zea mays GRMZM2G092542 I 0.798
GRMZM2G110913 Zea mays GRMZM2G110913 I 0.707
GRMZM2G150594 Zea mays GRMZM2G150594 I 0.707
GSMUA_Achr10G06700_001 Musa acuminata GSMUA_Achr10G06700_001 I 0.768
GSMUA_Achr11G02110_001 Musa acuminata GSMUA_Achr11G02110_001 I 0.768
GSMUA_Achr1G01350_001 Musa acuminata GSMUA_Achr1G01350_001 I 0.707
GSMUA_Achr1G01360_001 Musa acuminata GSMUA_Achr1G01360_001 I 0.768
GSMUA_Achr1G02520_001 Musa acuminata GSMUA_Achr1G02520_001 I 0.707
GSMUA_Achr1G06580_001 Musa acuminata GSMUA_Achr1G06580_001 I 0.818
GSMUA_Achr4G25190_001 Musa acuminata GSMUA_Achr4G25190_001 I 0.798
GSMUA_Achr8G14330_001 Musa acuminata GSMUA_Achr8G14330_001 I 0.778
GSMUA_AchrUn_randomG07730_001 Musa acuminata GSMUA_AchrUn_randomG07730_001 I 0.808
GSMUA_AchrUn_randomG23710_001 Musa acuminata GSMUA_AchrUn_randomG23710_001 I 0.818
LPERR02G31040 Leersia perrieri LPERR02G31040 I 0.727
LPERR03G03470 Leersia perrieri LPERR03G03470 I 0.798
LPERR03G09330 Leersia perrieri LPERR03G09330 I 0.707
LPERR08G20530 Leersia perrieri LPERR08G20530 I 0.838
MLOC_10784 Hordeum vulgare MLOC_10784 I 0.788
MLOC_52276 Hordeum vulgare MLOC_52276 I 0.808
MLOC_61947 Hordeum vulgare MLOC_61947 I 0.723
MTR_1g070205 Medicago truncatula MTR_1g070205 I 0.818
MTR_7g096610 Medicago truncatula MTR_7g096610 I 0.818
OB02G44330 Oryza brachyantha OB02G44330 I 0.737
OB03G13890 Oryza brachyantha OB03G13890 I 0.798
OB08G30680 Oryza brachyantha OB08G30680 I 0.848
OBART03G03830 Oryza barthii OBART03G03830 I 0.798
OBART03G10450 Oryza barthii OBART03G10450 I 0.707
OBART08G23860 Oryza barthii OBART08G23860 I 0.828
OGLUM02G38740 Oryza glumaepatula OGLUM02G38740 I 0.727
OGLUM03G03710 Oryza glumaepatula OGLUM03G03710 I 0.750
OGLUM03G10340 Oryza glumaepatula OGLUM03G10340 I 0.707
OGLUM08G25340 Oryza glumaepatula OGLUM08G25340 I 0.828
OLONG_001985 Oryza longistaminata OLONG_001985 I 0.700
OLONG_010223 Oryza longistaminata OLONG_010223 I 0.828
OLONG_020841 Oryza longistaminata OLONG_020841 I 0.750
OMERI02G35350 Oryza meridionalis OMERI02G35350 I 0.727
OMERI03G09680 Oryza meridionalis OMERI03G09680 I 0.707
OMERI07G01660 Oryza meridionalis OMERI07G01660 I 0.798
OMERI08G18670 Oryza meridionalis OMERI08G18670 I 0.828
ONIVA02G40360 Oryza nivara ONIVA02G40360 I 0.727
ONIVA03G03580 Oryza nivara ONIVA03G03580 I 0.798
ONIVA09G01330 Oryza nivara ONIVA09G01330 I 0.828
OPUNC02G34750 Oryza punctata OPUNC02G34750 I 0.717
OPUNC03G03520 Oryza punctata OPUNC03G03520 I 0.798
OPUNC03G10080 Oryza punctata OPUNC03G10080 I 0.707
OPUNC08G21770 Oryza punctata OPUNC08G21770 I 0.828
ORGLA02G0327800 Oryza glaberrima ORGLA02G0327800 I 0.727
ORGLA03G0035900 Oryza glaberrima ORGLA03G0035900 I 0.798
ORGLA03G0100400 Oryza glaberrima ORGLA03G0100400 I 0.707
ORGLA08G0192400 Oryza glaberrima ORGLA08G0192400 I 0.828
ORUFI02G39110 Oryza rufipogon ORUFI02G39110 I 0.727
ORUFI03G03550 Oryza rufipogon ORUFI03G03550 I 0.798
ORUFI03G10670 Oryza rufipogon ORUFI03G10670 I 0.707
ORUFI08G26340 Oryza rufipogon ORUFI08G26340 I 0.828
OS02G0820500 Oryza sativa OS02G0820500 I 0.727
OS03G0149100 Oryza sativa OS03G0149100 I 0.798
OS03G0246900 Oryza sativa OS03G0246900 I 0.707
OS08G0563400 Oryza sativa OS08G0563400 I 0.828
PGSC0003DMG400009716 Solanum tuberosum PGSC0003DMG400009716 I 0.818
POPTR_0002s04200 Populus trichocarpa POPTR_0002s04200 I 0.848
PRUPE_ppa019939mg Prunus persica PRUPE_ppa019939mg I 0.808
PRUPE_ppa025889mg Prunus persica PRUPE_ppa025889mg I 0.838
Sb01g041130 Sorghum bicolor Sb01g041130 I 0.707
Sb01g046990 Sorghum bicolor Sb01g046990 I 0.798
Sb04g037550 Sorghum bicolor Sb04g037550 I 0.737
Sb07g023810 Sorghum bicolor Sb07g023810 I 0.818
Si015156m.g Setaria italica Si015156m.g I 0.828
Si019578m.g Setaria italica Si019578m.g I 0.737
Si040019m.g Setaria italica Si040019m.g I 0.798
Solyc09g066270.2 Solanum lycopersicum Solyc09g066270.2 I 0.808
TCM_004103 Theobroma cacao TCM_004103 I 0.800
Traes_4AL_CAF4E16B5 Triticum aestivum Traes_4AL_CAF4E16B5 I 0.778
Traes_4BL_A4D0F4AD6 Triticum aestivum Traes_4BL_A4D0F4AD6 I 0.788
Traes_4BS_5D9291539 Triticum aestivum Traes_4BS_5D9291539 I 0.818
Traes_4DL_43D63ABE3 Triticum aestivum Traes_4DL_43D63ABE3 I 0.788
Traes_4DS_11C3B0459 Triticum aestivum Traes_4DS_11C3B0459 I 0.808
Traes_6AS_4EEA3E388 Triticum aestivum Traes_6AS_4EEA3E388 I 0.768
Traes_6BS_179B5B6E1 Triticum aestivum Traes_6BS_179B5B6E1 I 0.778
TRIUR3_07751 Triticum urartu TRIUR3_07751 I 0.808
VIT_07s0005g03020 Vitis vinifera VIT_07s0005g03020 I 0.848
LBD16 Vitis vinifera VIT_07s0005g03030 I 0.707
Ca_07763 Cicer arietinum Ca_07763 I 0.838
Ca_12214 Cicer arietinum Ca_12214 I 0.788
Cla006087 Citrullus lanatus Cla006087 I 0.838
Cla015094 Citrullus lanatus Cla015094 I 0.778
Pm020627 Prunus mume Pm020627 I 0.808
Pm020628 Prunus mume Pm020628 I 0.828
28428.m000040 Ricinus communis 28428.m000040 I 0.848
cassava28659.m1 Manihot esculenta cassava28659.m1 I 0.707
cassava40664.m1 Manihot esculenta cassava40664.m1 I 0.859
cassava41632.m1 Manihot esculenta cassava41632.m1 I 0.828
Cucsa.053450 Cucumis sativus Cucsa.053450 I 0.828
Cucsa.388160 Cucumis sativus Cucsa.388160 I 0.778
gw1.190.59.1 Physcomitrella patens gw1.190.59.1 I 0.705
mgf020773m Mimulus guttatus mgf020773m I 0.848
Aquca_017_00693 Aquilegia coerulea Aquca_017_00693 I 0.818
Aquca_034_00400 Aquilegia coerulea Aquca_034_00400 I 0.828
Bostr.20903s0070 Boechera stricta Bostr.20903s0070 I 0.939
Bostr.25993s0537 Boechera stricta Bostr.25993s0537 I 0.838
Bostr.25993s0538 Boechera stricta Bostr.25993s0538 I 0.707
Cagra.0686s0036 Capsella grandiflora Cagra.0686s0036 I 0.939
Cagra.2636s0029 Capsella grandiflora Cagra.2636s0029 I 0.707
Carubv10019250m.g Capsella rubella Carubv10019250m.g I 0.939
Carubv10025548m.g Capsella rubella Carubv10025548m.g I 0.707
Ciclev10023341m.g Citrus clementina Ciclev10023341m.g I 0.859
Eucgr.B01529 Eucalyptus grandis Eucgr.B01529 I 0.848
evm.TU.supercontig_50.42 Carica papaya evm.TU.supercontig_50.42 I 0.859
evm.TU.supercontig_50.43 Carica papaya evm.TU.supercontig_50.43 I 0.707
gene08253-v1.0-hybrid Fragaria vesca gene08253-v1.0-hybrid I 0.828
gene08254-v1.0-hybrid Fragaria vesca gene08254-v1.0-hybrid I 0.788
Gorai.001G251700 Gossypium raimondii Gorai.001G251700 I 0.788
Gorai.004G073200 Gossypium raimondii Gorai.004G073200 I 0.808
Gorai.004G073300 Gossypium raimondii Gorai.004G073300 I 0.838
Gorai.004G220000 Gossypium raimondii Gorai.004G220000 I 0.828
Gorai.007G144500 Gossypium raimondii Gorai.007G144500 I 0.848
Lus10000613.g Linum usitatissimum Lus10000613.g I 0.859
Lus10033873.g Linum usitatissimum Lus10033873.g I 0.848
orange1.1g027399m.g Citrus sinensis orange1.1g027399m.g I 0.859
Pavir.Aa00097 Panicum virgatum Pavir.Aa00097 I 0.737
Pavir.Fa00011 Panicum virgatum Pavir.Fa00011 I 0.838
Pavir.Ia04220 Panicum virgatum Pavir.Ia04220 I 0.798
Pavir.Ib00283 Panicum virgatum Pavir.Ib00283 I 0.798
Pavir.J03376 Panicum virgatum Pavir.J03376 I 0.788
Pavir.J34872 Panicum virgatum Pavir.J34872 I 0.707
Pavir.J39638 Panicum virgatum Pavir.J39638 I 0.737
SapurV1A.0006s0970 Salix purpurea SapurV1A.0006s0970 I 0.838
Thhalv10006226m.g Eutrema salsugineum Thhalv10006226m.g I 0.949
Thhalv10017158m.g Eutrema salsugineum Thhalv10017158m.g I 0.707
PK23380.1 Cannabis sativa PK23380.1 I 0.806
LjT35F15.90.nd Lotus japonicus LjT35F15.90.nd I 0.808
LBD14 Arabidopsis thaliana AT2G31310 N 0.707
LBD17 Arabidopsis thaliana AT2G42440 N 0.859
Bo4g052270 Brassica oleracea Bo4g052270 N 0.707
Bo4g191540 Brassica oleracea Bo4g191540 N 0.869
Bra016876 Brassica rapa Bra016876 N 0.879
Bra021737 Brassica rapa Bra021737 N 0.727
fgenesh1_pg.C_scaffold_4002383 Arabidopsis lyrata fgenesh1_pg.C_scaffold_4002383 N 0.848
Traes_4AL_BB3F89030 Triticum aestivum Traes_4AL_BB3F89030 N 0.778
Traes_4DL_05F87867C Triticum aestivum Traes_4DL_05F87867C N 0.707
Bostr.24513s0089 Boechera stricta Bostr.24513s0089 N 0.707
Cagra.6952s0010 Capsella grandiflora Cagra.6952s0010 N 0.707
Carubv10025067m.g Capsella rubella Carubv10025067m.g N 0.707
Thhalv10017299m.g Eutrema salsugineum Thhalv10017299m.g N 0.717
Thhalv10017903m.g Eutrema salsugineum Thhalv10017903m.g N 0.869