OGLUM03G03700 (Oryza glumaepatula)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 OGLUM03G03700 T245567_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD16
M00870_2.00 		Arabidopsis thaliana
DNHHYVCGG
CCGBRDDNH		 PBM
Franco-Zorrilla et al.(2014)
LBD16 		0.722 0.722
LBD16
M06958_2.00 		Arabidopsis thaliana
SCGGAAAWNVCGSMR
YKSCGBNWTTTCCGS		 Dap-seq
OMalley et al.(2016)
ASL18_col_a 		0.722 0.722
LBD16
M06959_2.00 		Arabidopsis thaliana
SCDBDWTTYVCGSHDN
NHDSCGBRAAWHVHGS		 Dap-seq
OMalley et al.(2016)
ASL18_colamp_a 		0.722 0.722
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OGLUM03G03700.1 LOB 13 103

Links

Other LOB family TFs
Other Oryza glumaepatula TFs

76 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
LBD16 Arabidopsis thaliana AT2G42430 D 0.722
TRIUR3_01477 Triticum urartu TRIUR3_01477 I 0.756
ORGLA03G0035800 Oryza glaberrima ORGLA03G0035800 I 0.879
Traes_6DL_850266B2A Triticum aestivum Traes_6DL_850266B2A I 0.756
Traes_6AL_D6045E37C Triticum aestivum Traes_6AL_D6045E37C I 0.756
Traes_4DS_11C3B0459 Triticum aestivum Traes_4DS_11C3B0459 I 0.722
Traes_4DL_43D63ABE3 Triticum aestivum Traes_4DL_43D63ABE3 I 0.717
Traes_4BL_A4D0F4AD6 Triticum aestivum Traes_4BL_A4D0F4AD6 I 0.717
Traes_4AL_CAF4E16B5 Triticum aestivum Traes_4AL_CAF4E16B5 I 0.717
Si037727m.g Setaria italica Si037727m.g I 0.922
Si019578m.g Setaria italica Si019578m.g I 0.744
Si015156m.g Setaria italica Si015156m.g I 0.733
Sb01g047000 Sorghum bicolor Sb01g047000 I 0.828
POPTR_0002s04210 Populus trichocarpa POPTR_0002s04210 I 0.711
OS03G0149000 Oryza sativa OS03G0149000 I 0.879
OS02G0820500 Oryza sativa OS02G0820500 I 0.744
ORUFI03G03540 Oryza rufipogon ORUFI03G03540 I 1.000
ORUFI02G39110 Oryza rufipogon ORUFI02G39110 I 0.744
PDK_20s1428661g002 Phoenix dactylifera PDK_20s1428661g002 I 0.711
Eucgr.K03284 Eucalyptus grandis Eucgr.K03284 I 0.722
AMTR_s00041p00044170 Amborella trichopoda AMTR_s00041p00044170 I 0.711
LjT35F15.70.nd Lotus japonicus LjT35F15.70.nd I 0.700
Pavir.J24246 Panicum virgatum Pavir.J24246 I 0.922
Pavir.J03376 Panicum virgatum Pavir.J03376 I 0.756
Pavir.Ib00282 Panicum virgatum Pavir.Ib00282 I 0.828
Gorai.011G267700 Gossypium raimondii Gorai.011G267700 I 0.700
Gorai.007G144400 Gossypium raimondii Gorai.007G144400 I 0.722
Gorai.001G251600 Gossypium raimondii Gorai.001G251600 I 0.711
LBD16 Vitis vinifera VIT_07s0005g03030 I 0.744
Eucgr.B01529 Eucalyptus grandis Eucgr.B01529 I 0.711
Carubv10025548m.g Capsella rubella Carubv10025548m.g I 0.722
Cagra.2636s0029 Capsella grandiflora Cagra.2636s0029 I 0.722
Aquca_034_00400 Aquilegia coerulea Aquca_034_00400 I 0.722
Aquca_017_00693 Aquilegia coerulea Aquca_017_00693 I 0.700
Aquca_017_00683 Aquilegia coerulea Aquca_017_00683 I 0.711
mgf020773m Mimulus guttatus mgf020773m I 0.711
gw1.190.59.1 Physcomitrella patens gw1.190.59.1 I 0.705
GRMZM2G092483 Zea mays GRMZM2G092483 I 0.922
LPERR03G03460 Leersia perrieri LPERR03G03460 I 0.933
LPERR02G31040 Leersia perrieri LPERR02G31040 I 0.756
GSMUA_AchrUn_randomG10470_001 Musa acuminata GSMUA_AchrUn_randomG10470_001 I 0.711
GSMUA_AchrUn_randomG07730_001 Musa acuminata GSMUA_AchrUn_randomG07730_001 I 0.733
GSMUA_Achr8G14330_001 Musa acuminata GSMUA_Achr8G14330_001 I 0.722
GSMUA_Achr5G13230_001 Musa acuminata GSMUA_Achr5G13230_001 I 0.700
GSMUA_Achr4G25190_001 Musa acuminata GSMUA_Achr4G25190_001 I 0.756
GSMUA_Achr3G27340_001 Musa acuminata GSMUA_Achr3G27340_001 I 0.700
GSMUA_Achr1G01350_001 Musa acuminata GSMUA_Achr1G01350_001 I 0.756
LPERR08G20530 Leersia perrieri LPERR08G20530 I 0.722
GLYMA19G34600 Glycine max GLYMA19G34600 I 0.700
GLYMA10G04050 Glycine max GLYMA10G04050 I 0.711
F775_22967 Aegilops tauschii F775_22967 I 0.722
BRADI1G75110 Brachypodium distachyon BRADI1G75110 I 0.717
Bra016877 Brassica rapa Bra016877 I 0.711
Bo8g092560 Brassica oleracea Bo8g092560 I 0.744
BGIOSGA011866 Oryza indica BGIOSGA011866 I 0.879
BGIOSGA005344 Oryza indica BGIOSGA005344 I 0.744
OBART03G03820 Oryza barthii OBART03G03820 I 1.000
OPUNC03G03510 Oryza punctata OPUNC03G03510 I 0.879
ONIVA03G03570 Oryza nivara ONIVA03G03570 I 1.000
ONIVA02G40360 Oryza nivara ONIVA02G40360 I 0.744
OMERI02G35350 Oryza meridionalis OMERI02G35350 I 0.744
OLONG_001985 Oryza longistaminata OLONG_001985 I 0.700
OGLUM02G38740 Oryza glumaepatula OGLUM02G38740 I 0.744
ORGLA02G0327800 Oryza glaberrima ORGLA02G0327800 I 0.744
OB03G13880 Oryza brachyantha OB03G13880 I 0.869
MLOC_61947 Hordeum vulgare MLOC_61947 I 0.771
MLOC_52276 Hordeum vulgare MLOC_52276 I 0.733
MLOC_10784 Hordeum vulgare MLOC_10784 I 0.717
Traes_4AL_3BA1D51E2 Triticum aestivum Traes_4AL_3BA1D51E2 N 0.848
Traes_4BL_F71DE14F7 Triticum aestivum Traes_4BL_F71DE14F7 N 0.944
Traes_4BS_B43A99154 Triticum aestivum Traes_4BS_B43A99154 N 0.944
OLONG_020840 Oryza longistaminata OLONG_020840 N 0.879
BRADI1G75120 Brachypodium distachyon BRADI1G75120 N 0.798
Traes_4DL_05F87867C Triticum aestivum Traes_4DL_05F87867C N 0.848
OMERI07G01670 Oryza meridionalis OMERI07G01670 N 0.879
MLOC_10783 Hordeum vulgare MLOC_10783 N 0.848