Cla021625 (Citrullus lanatus)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Cla021625 T246357_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD18
M06962_2.00 		Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN
NHNNYKSCDBDWTYYCCGS		 Dap-seq
OMalley et al.(2016)
LBD18_col_a 		0.798 0.798
LBD18
M06963_2.00 		Arabidopsis thaliana
CDBDWTTTMHGSHRN
NYDSCDKAAAWHVHG		 Dap-seq
OMalley et al.(2016)
LBD18_colamp_a 		0.798 0.798
LBD30
M01066_2.00 		Arabidopsis thaliana
BVWWWHVNGG
CCNBDWWWBV		 PBM
Sullivan et al.(2014)
pTH7467 		0.747 0.747
LBD30
M01067_2.00 		Arabidopsis thaliana
VWWWNVNGGD
HCCNBNWWWB		 PBM
Sullivan et al.(2014)
pTH7616 		0.747 0.747
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla021625 LOB 18 117

Links

Other LOB family TFs
Other Citrullus lanatus TFs

176 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
LBD18 Arabidopsis thaliana AT2G45420 D 0.798
LBD30 Arabidopsis thaliana AT4G00220 D 0.747
AMTR_s00041p00044170 Amborella trichopoda AMTR_s00041p00044170 I 0.788
BGIOSGA011118 Oryza indica BGIOSGA011118 I 0.798
BGIOSGA032254 Oryza indica BGIOSGA032254 I 0.758
Bo2g097560 Brassica oleracea Bo2g097560 I 0.737
Bo4g024620 Brassica oleracea Bo4g024620 I 0.798
Bo4g195510 Brassica oleracea Bo4g195510 I 0.708
Bo4g195520 Brassica oleracea Bo4g195520 I 0.778
Bo9g002160 Brassica oleracea Bo9g002160 I 0.737
Bra001087 Brassica rapa Bra001087 I 0.735
Bra004910 Brassica rapa Bra004910 I 0.788
Bra008514 Brassica rapa Bra008514 I 0.737
Bra037323 Brassica rapa Bra037323 I 0.737
Bra040311 Brassica rapa Bra040311 I 0.788
BRADI1G68170 Brachypodium distachyon BRADI1G68170 I 0.798
BRADI3G22510 Brachypodium distachyon BRADI3G22510 I 0.737
F775_04528 Aegilops tauschii F775_04528 I 0.727
LBD18 Arabidopsis lyrata fgenesh2_kg.4__2737__AT2G45420.1 I 0.798
LBD30 Arabidopsis lyrata fgenesh2_kg.6__3680__AT4G00220.1 I 0.747
GLYMA01G34523 Glycine max GLYMA01G34523 I 0.737
GLYMA01G34540 Glycine max GLYMA01G34540 I 0.818
GLYMA03G02620 Glycine max GLYMA03G02620 I 0.818
GLYMA03G02631 Glycine max GLYMA03G02631 I 0.727
GLYMA03G31830 Glycine max GLYMA03G31830 I 0.717
GLYMA09G40500 Glycine max GLYMA09G40500 I 0.788
GLYMA10G04040 Glycine max GLYMA10G04040 I 0.707
GLYMA18G45320 Glycine max GLYMA18G45320 I 0.788
GLYMA19G34590 Glycine max GLYMA19G34590 I 0.717
GRMZM2G076327 Zea mays GRMZM2G076327 I 0.747
GRMZM2G110913 Zea mays GRMZM2G110913 I 0.808
GRMZM2G150594 Zea mays GRMZM2G150594 I 0.808
GSMUA_Achr1G02520_001 Musa acuminata GSMUA_Achr1G02520_001 I 0.848
GSMUA_Achr2G11240_001 Musa acuminata GSMUA_Achr2G11240_001 I 0.798
GSMUA_Achr5G11330_001 Musa acuminata GSMUA_Achr5G11330_001 I 0.828
GSMUA_AchrUn_randomG10470_001 Musa acuminata GSMUA_AchrUn_randomG10470_001 I 0.808
LPERR03G09330 Leersia perrieri LPERR03G09330 I 0.798
MLOC_55239 Hordeum vulgare MLOC_55239 I 0.808
MTR_7g074990 Medicago truncatula MTR_7g074990 I 0.737
MTR_7g075230 Medicago truncatula MTR_7g075230 I 0.707
MTR_7g096530 Medicago truncatula MTR_7g096530 I 0.717
MTR_8g036085 Medicago truncatula MTR_8g036085 I 0.798
MTR_8g036105 Medicago truncatula MTR_8g036105 I 0.758
OB03G20590 Oryza brachyantha OB03G20590 I 0.791
OB10G12360 Oryza brachyantha OB10G12360 I 0.778
OBART03G10450 Oryza barthii OBART03G10450 I 0.798
OGLUM03G10340 Oryza glumaepatula OGLUM03G10340 I 0.798
OGLUM10G03230 Oryza glumaepatula OGLUM10G03230 I 0.758
OLONG_001985 Oryza longistaminata OLONG_001985 I 0.800
OLONG_028429 Oryza longistaminata OLONG_028429 I 0.764
OMERI03G09680 Oryza meridionalis OMERI03G09680 I 0.798
ONIVA10G03250 Oryza nivara ONIVA10G03250 I 0.758
OPUNC03G10080 Oryza punctata OPUNC03G10080 I 0.798
OPUNC10G02630 Oryza punctata OPUNC10G02630 I 0.758
ORGLA03G0100400 Oryza glaberrima ORGLA03G0100400 I 0.798
ORGLA10G0025200 Oryza glaberrima ORGLA10G0025200 I 0.758
ORUFI03G10670 Oryza rufipogon ORUFI03G10670 I 0.798
ORUFI10G03180 Oryza rufipogon ORUFI10G03180 I 0.758
OS03G0246900 Oryza sativa OS03G0246900 I 0.798
OS10G0162600 Oryza sativa OS10G0162600 I 0.758
PGSC0003DMG402012772 Solanum tuberosum PGSC0003DMG402012772 I 0.787
POPTR_0002s04210 Populus trichocarpa POPTR_0002s04210 I 0.707
POPTR_0002s14980 Populus trichocarpa POPTR_0002s14980 I 0.713
POPTR_0002s14990 Populus trichocarpa POPTR_0002s14990 I 0.860
POPTR_0005s24320 Populus trichocarpa POPTR_0005s24320 I 0.707
POPTR_0010s20800 Populus trichocarpa POPTR_0010s20800 I 0.707
POPTR_0014s06580 Populus trichocarpa POPTR_0014s06580 I 0.727
POPTR_0014s06590 Populus trichocarpa POPTR_0014s06590 I 0.758
PRUPE_ppa010383mg Prunus persica PRUPE_ppa010383mg I 0.828
PRUPE_ppa017589mg Prunus persica PRUPE_ppa017589mg I 0.768
PRUPE_ppa025349mg Prunus persica PRUPE_ppa025349mg I 0.717
Sb01g024400 Sorghum bicolor Sb01g024400 I 0.707
Sb01g041130 Sorghum bicolor Sb01g041130 I 0.808
SELMODRAFT_49270 Selaginella moellendorffii SELMODRAFT_49270 I 0.713
SELMODRAFT_59642 Selaginella moellendorffii SELMODRAFT_59642 I 0.713
Solyc01g091420.1 Solanum lycopersicum Solyc01g091420.1 I 0.818
TCM_004106 Theobroma cacao TCM_004106 I 0.727
TCM_005496 Theobroma cacao TCM_005496 I 0.826
TCM_005497 Theobroma cacao TCM_005497 I 0.737
TCM_042730 Theobroma cacao TCM_042730 I 0.707
Traes_4AS_5971FF832 Triticum aestivum Traes_4AS_5971FF832 I 0.808
Traes_4BL_3FB579782 Triticum aestivum Traes_4BL_3FB579782 I 0.798
Traes_4DL_A2012EA68 Triticum aestivum Traes_4DL_A2012EA68 I 0.808
TRIUR3_25587 Triticum urartu TRIUR3_25587 I 0.737
LBD16 Vitis vinifera VIT_07s0005g03030 I 0.707
LBD30 Vitis vinifera VIT_15s0048g00830 I 0.808
VIT_15s0048g00840 Vitis vinifera VIT_15s0048g00840 I 0.717
Ca_12213 Cicer arietinum Ca_12213 I 0.707
Ca_19598 Cicer arietinum Ca_19598 I 0.727
Ca_20428 Cicer arietinum Ca_20428 I 0.758
Ca_20429 Cicer arietinum Ca_20429 I 0.730
Cla006088 Citrullus lanatus Cla006088 I 0.707
Cla007068 Citrullus lanatus Cla007068 I 0.828
Cla007069 Citrullus lanatus Cla007069 I 0.737
Pm017935 Prunus mume Pm017935 I 0.758
Pm017936 Prunus mume Pm017936 I 0.828
Pm020629 Prunus mume Pm020629 I 0.717
30174.m008897 Ricinus communis 30174.m008897 I 0.737
30174.m008898 Ricinus communis 30174.m008898 I 0.838
cassava15612.m1 Manihot esculenta cassava15612.m1 I 0.707
cassava28659.m1 Manihot esculenta cassava28659.m1 I 0.818
cassava28672.m1 Manihot esculenta cassava28672.m1 I 0.737
cassava36912.valid.m1 Manihot esculenta cassava36912.valid.m1 I 0.838
cassava40137.m1 Manihot esculenta cassava40137.m1 I 0.727
Cucsa.053440 Cucumis sativus Cucsa.053440 I 0.707
Cucsa.257700 Cucumis sativus Cucsa.257700 I 0.960
Cucsa.362830 Cucumis sativus Cucsa.362830 I 0.725
Cucsa.362840 Cucumis sativus Cucsa.362840 I 0.828
gw1.157.74.1 Physcomitrella patens gw1.157.74.1 I 0.707
gw1.190.59.1 Physcomitrella patens gw1.190.59.1 I 0.727
gw1.261.12.1 Physcomitrella patens gw1.261.12.1 I 0.707
gw1.35.169.1 Physcomitrella patens gw1.35.169.1 I 0.707
gw1.42.84.1 Physcomitrella patens gw1.42.84.1 I 0.736
gw1.61.81.1 Physcomitrella patens gw1.61.81.1 I 0.707
mgf020735m Mimulus guttatus mgf020735m I 0.747
Aquca_009_00560 Aquilegia coerulea Aquca_009_00560 I 0.707
Aquca_013_00578 Aquilegia coerulea Aquca_013_00578 I 0.818
Aquca_013_00580 Aquilegia coerulea Aquca_013_00580 I 0.758
Aquca_034_00401 Aquilegia coerulea Aquca_034_00401 I 0.717
Bostr.14547s0031 Boechera stricta Bostr.14547s0031 I 0.747
Bostr.25993s0233 Boechera stricta Bostr.25993s0233 I 0.798
Cagra.0698s0021 Capsella grandiflora Cagra.0698s0021 I 0.798
Cagra.1261s0013 Capsella grandiflora Cagra.1261s0013 I 0.707
Cagra.1261s0014 Capsella grandiflora Cagra.1261s0014 I 0.758
Carubv10001875m.g Capsella rubella Carubv10001875m.g I 0.758
Carubv10002489m.g Capsella rubella Carubv10002489m.g I 0.717
Carubv10025050m.g Capsella rubella Carubv10025050m.g I 0.798
Ciclev10021992m.g Citrus clementina Ciclev10021992m.g I 0.838
Ciclev10024416m.g Citrus clementina Ciclev10024416m.g I 0.707
Eucgr.E01414 Eucalyptus grandis Eucgr.E01414 I 0.828
Eucgr.K01522 Eucalyptus grandis Eucgr.K01522 I 0.707
evm.TU.supercontig_1.438 Carica papaya evm.TU.supercontig_1.438 I 0.707
evm.TU.supercontig_18.117 Carica papaya evm.TU.supercontig_18.117 I 0.727
evm.TU.supercontig_18.118 Carica papaya evm.TU.supercontig_18.118 I 0.822
evm.TU.supercontig_50.43 Carica papaya evm.TU.supercontig_50.43 I 0.707
gene08250-v1.0-hybrid Fragaria vesca gene08250-v1.0-hybrid I 0.717
gene19355-v1.0-hybrid Fragaria vesca gene19355-v1.0-hybrid I 0.788
gene19356-v1.0-hybrid Fragaria vesca gene19356-v1.0-hybrid I 0.768
Gorai.001G251600 Gossypium raimondii Gorai.001G251600 I 0.717
Gorai.004G073400 Gossypium raimondii Gorai.004G073400 I 0.707
Gorai.004G161100 Gossypium raimondii Gorai.004G161100 I 0.828
Gorai.007G091600 Gossypium raimondii Gorai.007G091600 I 0.727
Gorai.007G144400 Gossypium raimondii Gorai.007G144400 I 0.717
Gorai.008G114400 Gossypium raimondii Gorai.008G114400 I 0.828
Gorai.011G267700 Gossypium raimondii Gorai.011G267700 I 0.707
Lus10009298.g Linum usitatissimum Lus10009298.g I 0.737
MDP0000131964 Malus domestica MDP0000131964 I 0.717
MDP0000145761 Malus domestica MDP0000145761 I 0.707
MDP0000254224 Malus domestica MDP0000254224 I 0.815
MDP0000429067 Malus domestica MDP0000429067 I 0.747
orange1.1g036534m.g Citrus sinensis orange1.1g036534m.g I 0.838
orange1.1g040761m.g Citrus sinensis orange1.1g040761m.g I 0.707
orange1.1g041368m.g Citrus sinensis orange1.1g041368m.g I 0.703
Pavir.Ia02614 Panicum virgatum Pavir.Ia02614 I 0.747
Pavir.Ia03917 Panicum virgatum Pavir.Ia03917 I 0.747
Pavir.Ib02517 Panicum virgatum Pavir.Ib02517 I 0.758
Pavir.J34872 Panicum virgatum Pavir.J34872 I 0.808
SapurV1A.0006s0980 Salix purpurea SapurV1A.0006s0980 I 0.707
SapurV1A.0024s0780 Salix purpurea SapurV1A.0024s0780 I 0.778
SapurV1A.0024s0790 Salix purpurea SapurV1A.0024s0790 I 0.727
SapurV1A.0378s0180 Salix purpurea SapurV1A.0378s0180 I 0.707
SapurV1A.0532s0190 Salix purpurea SapurV1A.0532s0190 I 0.828
SapurV1A.0532s0200 Salix purpurea SapurV1A.0532s0200 I 0.727
Thhalv10001791m.g Eutrema salsugineum Thhalv10001791m.g I 0.798
Thhalv10028937m.g Eutrema salsugineum Thhalv10028937m.g I 0.727
PK00972.1 Cannabis sativa PK00972.1 I 0.733
PK21617.1 Cannabis sativa PK21617.1 I 0.739
PK23185.1 Cannabis sativa PK23185.1 I 0.798
PK23380.1 Cannabis sativa PK23380.1 I 0.746
PK25573.1 Cannabis sativa PK25573.1 I 0.727
chr1.CM1255.40.nc Lotus japonicus chr1.CM1255.40.nc I 0.758
chr3.LjT44N20.90.nd Lotus japonicus chr3.LjT44N20.90.nd I 0.758
chr5.CM0494.160.nd Lotus japonicus chr5.CM0494.160.nd I 0.756
LjSGA_002536.2 Lotus japonicus LjSGA_002536.2 I 0.808
LjT35F15.70.nd Lotus japonicus LjT35F15.70.nd I 0.725
cassava34632.m1 Manihot esculenta cassava34632.m1 N 0.707