CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Solyc12g056510.1 *(Solanum lycopersicum)* MADF
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF10545 (MADF_DNA_bdg)	IPR006578	Solyc12g056510.1	T249897_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
AT-GTL1 M06968_2.00	Arabidopsis thaliana	RHRGTAAAWW	WWTTTACYDY	Dap-seq OMalley et al.(2016) GTL1_col_a	0.884	0.691
AT-GTL1 M06969_2.00	Arabidopsis thaliana	RHRGTAAAWW	WWTTTACYDY	Dap-seq OMalley et al.(2016) GTL1_colamp_a	0.884	0.691
AT1G76880 M06970_2.00	Arabidopsis thaliana	RHRGTAAAAWNDDDWW	WWHHHNWTTTTACYDY	Dap-seq OMalley et al.(2016) AT1G76880_col_a	0.828	0.691
For this family, TFs with SR scores > 0.812* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Solyc12g056510.1.1	MADF	87	157	EMDVVFKDSSLKGPLWEEVSRKLAELGYHRSAKKCKEKFENVYKYHRRTKDGRASKADGKTYRFFDQLQAL
Solyc12g056510.1.1	MADF	473	543	LDLKYQENGPKGPLWEEISSGMRKIGYNRNAKRCKEKWENINKYFKKVKESNKKRPEDSKTCPYFHQLEAL

Links
Other MADF family TFs
Other *Solanum lycopersicum* TFs