29576.m000223 (Ricinus communis)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 29576.m000223 T250438_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT-GTL1
M06968_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_col_a 		0.841 0.662
AT-GTL1
M06969_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_colamp_a 		0.841 0.662
AT1G76880
M06970_2.00 		Arabidopsis thaliana
RHRGTAAAAWNDDDWW
WWHHHNWTTTTACYDY		 Dap-seq
OMalley et al.(2016)
AT1G76880_col_a 		0.827 0.713
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
29576.m000223 MADF 86 155
29576.m000223 MADF 465 536

Links

Other MADF family TFs
Other Ricinus communis TFs

194 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ZNF653 Homo sapiens ENSG00000161914 D
Zfp653 Rattus norvegicus ENSRNOG00000014065 I
ZNF653 Otolemur garnettii ENSOGAG00000007074 I
ENSONIG00000008038 Oreochromis niloticus ENSONIG00000008038 I
znf653 Oryzias latipes ENSORLG00000016563 I
ENSPANG00000016446 Papio anubis ENSPANG00000016446 I
ENSPFOG00000003530 Poecilia formosa ENSPFOG00000003530 I
ENSPPYG00000009584 Pongo abelii ENSPPYG00000009584 I
ZNF653 Pan troglodytes ENSPTRG00000010507 I
ZNF653 Pteropus vampyrus ENSPVAG00000014895 I
ENSNLEG00000012591 Nomascus leucogenys ENSNLEG00000012591 I
ZNF653 Sus scrofa ENSSSCG00000013616 I
ENSSTOG00000003640 Ictidomys tridecemlineatus ENSSTOG00000003640 I
ZNF653 Tursiops truncatus ENSTTRG00000001794 I
Alligator_sinensis_CCG017936.1 Alligator sinensis Alligator_sinensis_CCG017936.1 I
Cmyd_10005916 Chelonia mydas Cmyd_10005916 I
ENSMMUP00000027145 Macaca fascicularis ENSMMUP00000027145 I
Myotis_brandtii_Znf653_10003855 Myotis brandtii Myotis_brandtii_Znf653_10003855 I
Ogr06398 Ophisaurus gracilis Ogr06398 I
Pvit_14576 Pogona vitticeps Pvit_14576 I
ZNF653 Echinops telfairi ENSETEG00000007616 I
ENSAMEG00000010478 Ailuropoda melanoleuca ENSAMEG00000010478 I
ENSAMXG00000005448 Astyanax mexicanus ENSAMXG00000005448 I
ZNF653 Bos taurus ENSBTAG00000014415 I
ZNF653 Canis familiaris ENSCAFG00000031712 I
ZNF653 Callithrix jacchus ENSCJAG00000005551 I
ZNF653 Cavia porcellus ENSCPOG00000010842 I
ENSCSAG00000006753 Chlorocebus sabaeus ENSCSAG00000006753 I
znf653 Danio rerio ENSDARG00000093469 I
Zfp653 Dipodomys ordii ENSDORG00000007511 I
ENSOANG00000012102 Ornithorhynchus anatinus ENSOANG00000012102 I
ZNF653 Felis catus ENSFCAG00000004922 I
ENSLACG00000017182 Latimeria chalumnae ENSLACG00000017182 I
ZNF653 Loxodonta africana ENSLAFG00000026889 I
ZNF653 Myotis lucifugus ENSMLUG00000016337 I
ZNF653 Macaca mulatta ENSMMUG00000020617 I
ENSMPUG00000005002 Mustela putorius furo ENSMPUG00000005002 I
Zfp653 Mus musculus ENSMUSG00000038895 I
ENSACAG00000016965 Anolis carolinensis ENSACAG00000016965 I