Gorai.001G020300 (Gossypium raimondii)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 Gorai.001G020300 T250699_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
OS02G0104500
M02271_2.00 		Oryza sativa
NDGTAAWWHN
NDWWTTACHN		 PBM
Weirauch et al.(2014)
pTH8719 		0.857 0.691
OS02G0104500
M02272_2.00 		Oryza sativa
NDGTAAWWHN
NDWWTTACHN		 PBM
Weirauch et al.(2014)
pTH9273 		0.857 0.691
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.001G020300.1 MADF 427 497

Links

Other MADF family TFs
Other Gossypium raimondii TFs

43 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PK15172.1 Cannabis sativa PK15172.1 D
OS02G0104500 Oryza sativa OS02G0104500 D 0.857
Ciclev10010595m.g Citrus clementina Ciclev10010595m.g I 0.906
Lus10028584.g Linum usitatissimum Lus10028584.g I
Gorai.010G096900 Gossypium raimondii Gorai.010G096900 I 0.953
gene15385-v1.0-hybrid Fragaria vesca gene15385-v1.0-hybrid I 0.881
evm.TU.supercontig_21.195 Carica papaya evm.TU.supercontig_21.195 I
evm.TU.supercontig_126.31 Carica papaya evm.TU.supercontig_126.31 I 0.866
Eucgr.D02541 Eucalyptus grandis Eucgr.D02541 I
MDP0000122269 Malus domestica MDP0000122269 I
Aquca_037_00343 Aquilegia coerulea Aquca_037_00343 I
cassava25125.valid.m1 Manihot esculenta cassava25125.valid.m1 I 0.899
29739.m003611 Ricinus communis 29739.m003611 I 0.882
VIT_04s0008g01850 Vitis vinifera VIT_04s0008g01850 I 0.878
TRIUR3_30093 Triticum urartu TRIUR3_30093 I 0.825
TRIUR3_29570 Triticum urartu TRIUR3_29570 I
Traes_6AS_52AE4A6E2 Triticum aestivum Traes_6AS_52AE4A6E2 I 0.825
Traes_4DL_DC6A55EEE Triticum aestivum Traes_4DL_DC6A55EEE I
orange1.1g007316m.g Citrus sinensis orange1.1g007316m.g I
orange1.1g009174m.g Citrus sinensis orange1.1g009174m.g I 0.906
Pavir.Aa03569 Panicum virgatum Pavir.Aa03569 I 0.871
Pavir.Ab00054 Panicum virgatum Pavir.Ab00054 I 0.871
Pavir.Ab02437 Panicum virgatum Pavir.Ab02437 I
Pavir.Ga00673 Panicum virgatum Pavir.Ga00673 I
Pavir.Ib03751 Panicum virgatum Pavir.Ib03751 I
Pavir.J25029 Panicum virgatum Pavir.J25029 I
SapurV1A.0435s0090 Salix purpurea SapurV1A.0435s0090 I 0.884
SapurV1A.0655s0060 Salix purpurea SapurV1A.0655s0060 I
SapurV1A.0710s0040 Salix purpurea SapurV1A.0710s0040 I 0.895
PK14727.1 Cannabis sativa PK14727.1 I
LjSGA_034643.2 Lotus japonicus LjSGA_034643.2 I
LjSGA_134698.1 Lotus japonicus LjSGA_134698.1 I
Aquca_023_00132 Aquilegia coerulea Aquca_023_00132 I
OBART02G00380 Oryza barthii OBART02G00380 I 0.857
BGIOSGA011584 Oryza indica BGIOSGA011584 I
Bo6g083670 Brassica oleracea Bo6g083670 I
BRADI3G00697 Brachypodium distachyon BRADI3G00697 I 0.825
GRMZM2G037128 Zea mays GRMZM2G037128 I 0.871
GRMZM2G111760 Zea mays GRMZM2G111760 I 0.856
GSMUA_Achr1G24120_001 Musa acuminata GSMUA_Achr1G24120_001 I 0.881
GSMUA_Achr7G04610_001 Musa acuminata GSMUA_Achr7G04610_001 I 0.881
GSMUA_AchrUn_randomG03020_001 Musa acuminata GSMUA_AchrUn_randomG03020_001 I 0.856
LPERR02G00380 Leersia perrieri LPERR02G00380 I 0.847
MLOC_14207 Hordeum vulgare MLOC_14207 I
MLOC_22988 Hordeum vulgare MLOC_22988 I
MLOC_25460 Hordeum vulgare MLOC_25460 I 0.825
MLOC_70549 Hordeum vulgare MLOC_70549 I
MLOC_74813 Hordeum vulgare MLOC_74813 I
OB02G10400 Oryza brachyantha OB02G10400 I 0.862
BGIOSGA007300 Oryza indica BGIOSGA007300 I 0.857
OGLUM02G00360 Oryza glumaepatula OGLUM02G00360 I 0.857
OMERI02G09240 Oryza meridionalis OMERI02G09240 I 0.857
ONIVA02G00390 Oryza nivara ONIVA02G00390 I 0.857
OPUNC02G00050 Oryza punctata OPUNC02G00050 I 0.857
ORGLA02G0003500 Oryza glaberrima ORGLA02G0003500 I 0.857
ORGLA04G0173400 Oryza glaberrima ORGLA04G0173400 I
ORUFI02G00410 Oryza rufipogon ORUFI02G00410 I 0.857
POPTR_0006s23800 Populus trichocarpa POPTR_0006s23800 I 0.895
POPTR_0018s05520 Populus trichocarpa POPTR_0018s05520 I 0.884
POPTR_0018s05540 Populus trichocarpa POPTR_0018s05540 I 0.883
POPTR_0310s00200 Populus trichocarpa POPTR_0310s00200 I 0.884
Sb04g000520 Sorghum bicolor Sb04g000520 I 0.871
TCM_037381 Theobroma cacao TCM_037381 I 0.938
Traes_1AL_ED83D13D4 Triticum aestivum Traes_1AL_ED83D13D4 I
Traes_1DL_772D1D7DF Triticum aestivum Traes_1DL_772D1D7DF I