fgenesh2_kg.8__2543__AT5G65050.2 (Arabidopsis lyrata)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 fgenesh2_kg.8__2543__AT5G65050.2 T254044_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
FLC
M06990_2.00 		Arabidopsis thaliana
WWDMYNDWWWWGGAAASW
WSTTTCCWWWWHNRKHWW		 Dap-seq
OMalley et al.(2016)
AGL25_col_a 		0.851 0.851
FLC
M06991_2.00 		Arabidopsis thaliana
WCYHAAAAWGGAAAS
STTTCCWTTTTDRGW		 Dap-seq
OMalley et al.(2016)
AGL25_colamp_a 		0.851 0.851
AGL27
M08145_2.00 		Arabidopsis thaliana
MCMAAAATRGAAAB
VTTTCYATTTTKGK		 ChIP-seq
Mathelier et al.(2014)
MA1012.1 		0.851 0.851
FLC
M08147_2.00 		Arabidopsis thaliana
NNWWDCYVAAAWWRGAAAVHH
DDBTTTCYWWTTTBRGHWWNN		 ChIP-seq
Mathelier et al.(2014)
MA0558.1 		0.851 0.851
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.8__2543__AT5G65050.2 MADS box 10 56

Links

Other MADS box family TFs
Other Arabidopsis lyrata TFs

50 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SPL4 Arabidopsis thaliana AT1G53160 D 0.000
PRUPE_ppa000682mg Prunus persica PRUPE_ppa000682mg D 0.000
PK22320.1 Cannabis sativa PK22320.1 D 0.000
AMTR_s00045p00076020 Amborella trichopoda AMTR_s00045p00076020 I 0.000
AMTR_s00106p00142470 Amborella trichopoda AMTR_s00106p00142470 I 0.000
BGIOSGA016888 Oryza indica BGIOSGA016888 I 0.000
BGIOSGA024253 Oryza indica BGIOSGA024253 I 0.000
Bo4g042390 Brassica oleracea Bo4g042390 I 0.000
Bo5g127310 Brassica oleracea Bo5g127310 I 0.000
Bra005470 Brassica rapa Bra005470 I 0.000
Bra021880 Brassica rapa Bra021880 I 0.000
Bra027265 Brassica rapa Bra027265 I 0.000
Bra038101 Brassica rapa Bra038101 I 0.000
BRADI1G26720 Brachypodium distachyon BRADI1G26720 I 0.000
F775_02791 Aegilops tauschii F775_02791 I 0.000
SPL4 Arabidopsis lyrata fgenesh2_kg.1__4389__AT1G53160.2 I 0.000
GLYMA01G15134 Glycine max GLYMA01G15134 I 0.000
GLYMA02G01160 Glycine max GLYMA02G01160 I 0.000
GLYMA03G27195 Glycine max GLYMA03G27195 I 0.000
GLYMA06G36140 Glycine max GLYMA06G36140 I 0.000
GLYMA07G14641 Glycine max GLYMA07G14641 I 0.000
GLYMA10G01211 Glycine max GLYMA10G01211 I 0.000
GLYMA11G16556 Glycine max GLYMA11G16556 I 0.000
GLYMA12G27330 Glycine max GLYMA12G27330 I 0.000
GLYMA13G31090 Glycine max GLYMA13G31090 I 0.000
GLYMA15G08270 Glycine max GLYMA15G08270 I 0.000
GRMZM2G148467 Zea mays GRMZM2G148467 I 0.000
GSMUA_Achr1G08440_001 Musa acuminata GSMUA_Achr1G08440_001 I 0.000
GSMUA_Achr2G03070_001 Musa acuminata GSMUA_Achr2G03070_001 I 0.000
GSMUA_Achr4G23650_001 Musa acuminata GSMUA_Achr4G23650_001 I 0.000
GSMUA_Achr4G26940_001 Musa acuminata GSMUA_Achr4G26940_001 I 0.000
GSMUA_Achr5G13440_001 Musa acuminata GSMUA_Achr5G13440_001 I 0.000
LPERR03G34030 Leersia perrieri LPERR03G34030 I 0.000
LPERR04G17030 Leersia perrieri LPERR04G17030 I 0.000
MLOC_13032 Hordeum vulgare MLOC_13032 I 0.000
MLOC_69667 Hordeum vulgare MLOC_69667 I 0.000
MTR_2g014200 Medicago truncatula MTR_2g014200 I 0.000
MTR_4g088555 Medicago truncatula MTR_4g088555 I 0.000
MTR_5g046670 Medicago truncatula MTR_5g046670 I 0.000
MTR_7g444860 Medicago truncatula MTR_7g444860 I 0.000
MTR_8g463140 Medicago truncatula MTR_8g463140 I 0.000
OB03G47050 Oryza brachyantha OB03G47050 I 0.000
OB04G27960 Oryza brachyantha OB04G27960 I 0.000
OBART03G39900 Oryza barthii OBART03G39900 I 0.000
OBART04G20940 Oryza barthii OBART04G20940 I 0.000
OBART07G15570 Oryza barthii OBART07G15570 I 0.000
OGLUM03G39810 Oryza glumaepatula OGLUM03G39810 I 0.000
OGLUM04G20870 Oryza glumaepatula OGLUM04G20870 I 0.000
OGLUM07G15250 Oryza glumaepatula OGLUM07G15250 I 0.000
OMERI03G36740 Oryza meridionalis OMERI03G36740 I 0.000
OMERI04G17360 Oryza meridionalis OMERI04G17360 I 0.000
OMERI07G12270 Oryza meridionalis OMERI07G12270 I 0.000
ONIVA03G41820 Oryza nivara ONIVA03G41820 I 0.000
ONIVA04G19190 Oryza nivara ONIVA04G19190 I 0.000
ONIVA07G14170 Oryza nivara ONIVA07G14170 I 0.000
OPUNC03G37130 Oryza punctata OPUNC03G37130 I 0.000
OPUNC03G37170 Oryza punctata OPUNC03G37170 I 0.000
OPUNC04G18620 Oryza punctata OPUNC04G18620 I 0.000
ORGLA03G0367800 Oryza glaberrima ORGLA03G0367800 I 0.000
ORGLA04G0180000 Oryza glaberrima ORGLA04G0180000 I 0.000
ORUFI03G41710 Oryza rufipogon ORUFI03G41710 I 0.000
ORUFI04G22540 Oryza rufipogon ORUFI04G22540 I 0.000
ORUFI07G16070 Oryza rufipogon ORUFI07G16070 I 0.000
SPL6 Oryza sativa OS03G0833300 I 0.000
SPL7 Oryza sativa OS04G0551500 I 0.000
PGSC0003DMG400022824 Solanum tuberosum PGSC0003DMG400022824 I 0.000
POPTR_0002s14330 Populus trichocarpa POPTR_0002s14330 I 0.000
POPTR_0004s04630 Populus trichocarpa POPTR_0004s04630 I 0.000
POPTR_0014s05690 Populus trichocarpa POPTR_0014s05690 I 0.000
PRUPE_ppa011968mg Prunus persica PRUPE_ppa011968mg I 0.000
PRUPE_ppa012607mg Prunus persica PRUPE_ppa012607mg I 0.000
PRUPE_ppa022739mg Prunus persica PRUPE_ppa022739mg I 0.000
PRUPE_ppa023657mg Prunus persica PRUPE_ppa023657mg I 0.000
PRUPE_ppa024285mg Prunus persica PRUPE_ppa024285mg I 0.000
Sb06g024630 Sorghum bicolor Sb06g024630 I 0.000
Si010262m.g Setaria italica Si010262m.g I 0.000
Si032170m.g Setaria italica Si032170m.g I 0.000
Solyc10g009080.2 Solanum lycopersicum Solyc10g009080.2 I 0.000
TCM_005620 Theobroma cacao TCM_005620 I 0.000
TCM_029832 Theobroma cacao TCM_029832 I 0.000
TCM_031595 Theobroma cacao TCM_031595 I 0.000
Traes_2AL_B45245746 Triticum aestivum Traes_2AL_B45245746 I 0.000
Traes_2AS_C2A4AFE6F Triticum aestivum Traes_2AS_C2A4AFE6F I 0.000
Traes_2BL_69E6AB6D1 Triticum aestivum Traes_2BL_69E6AB6D1 I 0.000
Traes_2BS_186EA570A Triticum aestivum Traes_2BS_186EA570A I 0.000
TRIUR3_23102 Triticum urartu TRIUR3_23102 I 0.000
SPL3 Vitis vinifera VIT_10s0003g00050 I 0.000
VIT_15s0021g02290 Vitis vinifera VIT_15s0021g02290 I 0.000
VIT_19s0014g02350 Vitis vinifera VIT_19s0014g02350 I 0.000
Ca_00320 Cicer arietinum Ca_00320 I 0.000
Ca_10879 Cicer arietinum Ca_10879 I 0.000
Ca_16243 Cicer arietinum Ca_16243 I 0.000
Ca_24655 Cicer arietinum Ca_24655 I 0.000
Cla001541 Citrullus lanatus Cla001541 I 0.000
Cla002263 Citrullus lanatus Cla002263 I 0.000
Cla009788 Citrullus lanatus Cla009788 I 0.000
Cla021411 Citrullus lanatus Cla021411 I 0.000
Cla023735 Citrullus lanatus Cla023735 I 0.000
Pm010075 Prunus mume Pm010075 I 0.000
Pm011381 Prunus mume Pm011381 I 0.000
Pm014154 Prunus mume Pm014154 I 0.000
Pm017778 Prunus mume Pm017778 I 0.000
Pm022881 Prunus mume Pm022881 I 0.000
28211.m000132 Ricinus communis 28211.m000132 I 0.000
29983.m003158 Ricinus communis 29983.m003158 I 0.000
30174.m008805 Ricinus communis 30174.m008805 I 0.000
30190.m011329 Ricinus communis 30190.m011329 I 0.000
cassava17741.valid.m1 Manihot esculenta cassava17741.valid.m1 I 0.000
cassava29736.valid.m1 Manihot esculenta cassava29736.valid.m1 I 0.000
cassava31252.valid.m1 Manihot esculenta cassava31252.valid.m1 I 0.000
cassava37839.valid.m1 Manihot esculenta cassava37839.valid.m1 I 0.000
cassava46941.m1 Manihot esculenta cassava46941.m1 I 0.000
Cucsa.126820 Cucumis sativus Cucsa.126820 I 0.000
Cucsa.196000 Cucumis sativus Cucsa.196000 I 0.000
Cucsa.259800 Cucumis sativus Cucsa.259800 I 0.000
Cucsa.272530 Cucumis sativus Cucsa.272530 I 0.000
Cucsa.349620 Cucumis sativus Cucsa.349620 I 0.000
gw1.47.180.1 Physcomitrella patens gw1.47.180.1 I 0.000
mgf000195m Mimulus guttatus mgf000195m I 0.000
mgf009459m Mimulus guttatus mgf009459m I 0.000
mgf011616m Mimulus guttatus mgf011616m I 0.000
mgf025134m Mimulus guttatus mgf025134m I 0.000
Aquca_035_00165 Aquilegia coerulea Aquca_035_00165 I 0.000
Bostr.0124s0106 Boechera stricta Bostr.0124s0106 I 0.000
Bostr.23794s0714 Boechera stricta Bostr.23794s0714 I 0.000
Bostr.28625s0189 Boechera stricta Bostr.28625s0189 I 0.000
Cagra.1472s0017 Capsella grandiflora Cagra.1472s0017 I 0.000
Carubv10010422m.g Capsella rubella Carubv10010422m.g I 0.000
Carubv10016658m.g Capsella rubella Carubv10016658m.g I 0.000
Ciclev10016841m.g Citrus clementina Ciclev10016841m.g I 0.000
Ciclev10017104m.g Citrus clementina Ciclev10017104m.g I 0.000
Ciclev10020532m.g Citrus clementina Ciclev10020532m.g I 0.000
Ciclev10031270m.g Citrus clementina Ciclev10031270m.g I 0.000
Eucgr.B03518 Eucalyptus grandis Eucgr.B03518 I 0.000
Eucgr.D02505 Eucalyptus grandis Eucgr.D02505 I 0.000
Eucgr.E03260 Eucalyptus grandis Eucgr.E03260 I 0.000
Eucgr.F01828 Eucalyptus grandis Eucgr.F01828 I 0.000
Eucgr.F03303 Eucalyptus grandis Eucgr.F03303 I 0.000
Eucgr.K01046 Eucalyptus grandis Eucgr.K01046 I 0.000
evm.TU.supercontig_149.2 Carica papaya evm.TU.supercontig_149.2 I 0.000
evm.TU.supercontig_27.40 Carica papaya evm.TU.supercontig_27.40 I 0.000
evm.TU.supercontig_36.105 Carica papaya evm.TU.supercontig_36.105 I 0.000
evm.TU.supercontig_80.88 Carica papaya evm.TU.supercontig_80.88 I 0.000
gene00196-v1.0-hybrid Fragaria vesca gene00196-v1.0-hybrid I 0.000
gene17738-v1.0-hybrid Fragaria vesca gene17738-v1.0-hybrid I 0.000
gene29726-v1.0-hybrid Fragaria vesca gene29726-v1.0-hybrid I 0.000
Gorai.004G047200 Gossypium raimondii Gorai.004G047200 I 0.000
Gorai.007G087900 Gossypium raimondii Gorai.007G087900 I 0.000
Gorai.007G116100 Gossypium raimondii Gorai.007G116100 I 0.000
Gorai.008G107300 Gossypium raimondii Gorai.008G107300 I 0.000
Gorai.011G029400 Gossypium raimondii Gorai.011G029400 I 0.000
Gorai.013G169800 Gossypium raimondii Gorai.013G169800 I 0.000
Lus10009984.g Linum usitatissimum Lus10009984.g I 0.000
Lus10013999.g Linum usitatissimum Lus10013999.g I 0.000
Lus10015421.g Linum usitatissimum Lus10015421.g I 0.000
Lus10018610.g Linum usitatissimum Lus10018610.g I 0.000
Lus10039846.g Linum usitatissimum Lus10039846.g I 0.000
MDP0000156994 Malus domestica MDP0000156994 I 0.000
MDP0000158607 Malus domestica MDP0000158607 I 0.000
MDP0000180409 Malus domestica MDP0000180409 I 0.000
MDP0000262141 Malus domestica MDP0000262141 I 0.000
MDP0000589558 Malus domestica MDP0000589558 I 0.000
MDP0000861601 Malus domestica MDP0000861601 I 0.000
MDP0000865739 Malus domestica MDP0000865739 I 0.000
orange1.1g009653m.g Citrus sinensis orange1.1g009653m.g I 0.000
orange1.1g017256m.g Citrus sinensis orange1.1g017256m.g I 0.000
orange1.1g032310m.g Citrus sinensis orange1.1g032310m.g I 0.000
Pavir.Ga01083 Panicum virgatum Pavir.Ga01083 I 0.000
Pavir.Gb01121 Panicum virgatum Pavir.Gb01121 I 0.000
SapurV1A.0012s0510 Salix purpurea SapurV1A.0012s0510 I 0.000
SapurV1A.0033s0320 Salix purpurea SapurV1A.0033s0320 I 0.000
SapurV1A.0072s0370 Salix purpurea SapurV1A.0072s0370 I 0.000
SapurV1A.0382s0120 Salix purpurea SapurV1A.0382s0120 I 0.000
Thhalv10006656m.g Eutrema salsugineum Thhalv10006656m.g I 0.000
Thhalv10011728m.g Eutrema salsugineum Thhalv10011728m.g I 0.000
Thhalv10018054m.g Eutrema salsugineum Thhalv10018054m.g I 0.000
Thhalv10018065m.g Eutrema salsugineum Thhalv10018065m.g I 0.000
Thhalv10021617m.g Eutrema salsugineum Thhalv10021617m.g I 0.000
PK17790.1 Cannabis sativa PK17790.1 I 0.000
PK26639.1 Cannabis sativa PK26639.1 I 0.000
chr3.CM0160.520.nc Lotus japonicus chr3.CM0160.520.nc I 0.000
chr3.CM0282.980.nc Lotus japonicus chr3.CM0282.980.nc I 0.000
chr6.CM0114.270.nc Lotus japonicus chr6.CM0114.270.nc I 0.000
VIT_04s0210g00170 Vitis vinifera VIT_04s0210g00170 N 0.000