HMEL017831 (Heliconius melpomene)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 HMEL017831 T254457_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
bs
M03915_2.00 		Drosophila melanogaster
NCCWTATAWGGN
NCCWTATAWGGN		 SELEX
Nitta et al.(2015)
bs_1 		0.917 0.917
bs
M03916_2.00 		Drosophila melanogaster
NCCWTAHAWGGH
DCCWTDTAWGGN		 SELEX
Nitta et al.(2015)
bs_2 		0.917 0.917
Srf
M00178_2.00 		Mus musculus
NNDDWWHHNN
NNDDWWHHNN		 PBM
Badis et al.(2009)
Srf_3509 		0.875 0.875
unc-120
M00684_2.00 		Caenorhabditis elegans
CHWAWWDGG
CCHWWTWDG		 PBM
Narasimhan et al.(2015)
pTH10822 		0.875 0.875
SRF
M03341_2.00 		Homo sapiens
DCCWTATATGGT
ACCATATAWGGH		 SELEX
Jolma et al.(2013)
SRF_1 		0.875 0.875
SRF
M03342_2.00 		Homo sapiens
TKHCCWTATATGGKMA
TKMCCATATAWGGDMA		 SELEX
Jolma et al.(2013)
SRF_2 		0.875 0.875
SRF
M05553_2.00 		Homo sapiens
CCNTANAWGG
CCWTNTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_HT-SELEX 		0.875 0.875
SRF
M07981_2.00 		Homo sapiens
NNNWDNCCAWAWAWGGNVD
HBNCCWTWTWTGGNHWNNN		 ChIP-seq
Gerstein et al.(2012)
GM12878_SRF_HudsonAlpha 		0.875 0.875
SRF
M07982_2.00 		Homo sapiens
CCAWATAAGGNMAD
HTKNCCTTATWTGG		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_SRF_HudsonAlpha 		0.875 0.875
SRF
M07983_2.00 		Homo sapiens
NNWNNCCAWAWAWGGNVD
HBNCCWTWTWTGGNNWNN		 ChIP-seq
Gerstein et al.(2012)
HepG2_SRF_HudsonAlpha 		0.875 0.875
SRF
M07984_2.00 		Homo sapiens
GNCCAWATADGGHMANN
NNTKDCCHTATWTGGNC		 ChIP-seq
Gerstein et al.(2012)
K562_SRF_HudsonAlpha 		0.875 0.875
SRF
M09249_2.00 		Homo sapiens
HNWBVCCAWAWAWGGNRR
YYNCCWTWTWTGGBVWND		 Misc
Kulakovskiy et al.(2013)
SRF_HUMAN.H11MO.0.A 		0.875 0.875
Srf
M09254_2.00 		Mus musculus
NWDVCCAWAWAWGGVMR
YKBCCWTWTWTGGBHWN		 Misc
Kulakovskiy et al.(2013)
SRF_MOUSE.H11MO.0.A 		0.875 0.875
Srf
M09598_2.00 		Mus musculus
CCWWATWWGGNH
DNCCWWATWWGG		 Misc
Heinz et al.(2010)
PUER-Srf_Sullivan_et_al. 		0.875 0.875
SRF
M10947_2.00 		Homo sapiens
MNBWCCWTATAWGGGCAT
ATGCCCWTATAWGGWVNK		 Transfac
Matys et al.(2006)
V$SRF_01 		0.875 0.875
SRF
M10948_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_02 		0.875 0.875
SRF
M10949_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_03 		0.875 0.875
SRF
M10950_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_09 		0.875 0.875
SRF
M10951_2.00 		Homo sapiens
DCCWTATAWGGVSHB
VDSBCCWTATAWGGH		 Transfac
Matys et al.(2006)
V$SRF_C 		0.875 0.875
SRF
M10952_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q3 		0.875 0.875
SRF
M10953_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q4 		0.875 0.875
SRF
M10954_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_01 		0.875 0.875
SRF
M10955_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_02 		0.875 0.875
SRF
M10956_2.00 		Homo sapiens
BNCCAWATAWGGVN
NBCCWTATWTGGNV		 Transfac
Matys et al.(2006)
V$SRF_Q6 		0.875 0.875
SRF
M05554_2.00 		Homo sapiens
CCNTAYAWGG
CCWTRTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_Methyl-HT-SELEX 		0.875 0.875
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
HMEL017831-PA MADS box 209 232

Links

Other MADS box family TFs
Other Heliconius melpomene TFs

166 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SOCG_03639 Schizosaccharomyces octosporus SOCG_03639 N
PGTG_08863 Puccinia graminis PGTG_08863 N
PITC_033140 Penicillium italicum PITC_033140 N
PMAA_091540 Talaromyces marneffei PMAA_091540 N
PV04_10072 Capronia semiimmersa PV04_10072 N
PV05_03112 Exophiala xenobiotica PV05_03112 N
PV06_08089 Exophiala oligosperma PV06_08089 N
PV07_09262 Cladophialophora immunda PV07_09262 N
PV08_06900 Exophiala spinifera PV08_06900 N
PV10_01675 Exophiala mesophila PV10_01675 N
PVAR5_5971 Byssochlamys spectabilis PVAR5_5971 N
SJAG_00987 Schizosaccharomyces japonicus SJAG_00987 N
PFL1_06760 Pseudozyma flocculosa PFL1_06760 N
SPOG_04098 Schizosaccharomyces cryophilus SPOG_04098 N
TSTA_050320 Talaromyces stipitatus TSTA_050320 N
U727_0043243011 Penicillium solitum U727_0043243011 N
UREG_06253 Uncinocarpus reesii UREG_06253 N
Z517_02357 Fonsecaea pedrosoi Z517_02357 N
Z518_07647 Rhinocladiella mackenziei Z518_07647 N
Z519_04735 Cladophialophora bantiana Z519_04735 N
EDP43286.1 Malassezia globosa EDP43286.1 N
Pc12g06750 Penicillium chrysogenum Pc12g06750 N
PMAA_091540 Penicillium marneffei PMAA_091540 N
XP_002489438.1 Pichia pastoris XP_002489438.1 N
EURHEDRAFT_448117 Aspergillus ruber EURHEDRAFT_448117 N
A1O3_06320 Capronia epimyces A1O3_06320 N
A1O5_06001 Cladophialophora psammophila A1O5_06001 N
A1O7_09417 Cladophialophora yegresii A1O7_09417 N
A1O9_05511 Exophiala aquamarina A1O9_05511 N
BDDG_00964 Blastomyces dermatitidis BDDG_00964 N
CADAFLAG00000438 Aspergillus flavus CADAFLAG00000438 N
CADANGAG00005499 Aspergillus niger CADANGAG00005499 N
ANIA_06715 Aspergillus nidulans CADANIAG00007503 N
CADAORAG00002423 Aspergillus oryzae CADAORAG00002423 N
NFIA_026870 Neosartorya fischeri CADNFIAG00002605 N
EPUS_03374 Endocarpon pusillum EPUS_03374 N
A1O1_03785 Capronia coronata A1O1_03785 N
G647_09373 Cladophialophora carrionii G647_09373 N
HCBG_01177 Histoplasma capsulatum HCBG_01177 N
HMPREF1120_09024 Exophiala dermatitidis HMPREF1120_09024 N
HPODL_04058 Ogataea parapolymorpha HPODL_04058 N
MELLADRAFT_50812 Melampsora laricipopulina MELLADRAFT_50812 N
PAAG_00034 Paracoccidioides sp lutzii PAAG_00034 N
PABG_05070 Paracoccidioides brasiliensis PABG_05070 N
PAS_chr1-3_0098 Komagataella pastoris PAS_chr1-3_0098 N
PCH_Pc12g06750 Penicillium rubens PCH_Pc12g06750 N
PDE_09266 Penicillium oxalicum PDE_09266 N
PDIP_54290 Penicillium digitatum PDIP_54290 N