POPTR_0001s33740 (Populus trichocarpa)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 POPTR_0001s33740 T255801_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0001s33740.1 MADS box 3 48

Links

Other MADS box family TFs
Other Populus trichocarpa TFs

4 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Lus10004806.g Linum usitatissimum Lus10004806.g N
cassava39493.m1 Manihot esculenta cassava39493.m1 N
Bostr.6251s0108 Boechera stricta Bostr.6251s0108 N
Cagra.4082s0018 Capsella grandiflora Cagra.4082s0018 N
Cagra.4190s0013 Capsella grandiflora Cagra.4190s0013 N
Carubv10001432m.g Capsella rubella Carubv10001432m.g N
Eucgr.E01205 Eucalyptus grandis Eucgr.E01205 N
evm.TU.supercontig_11.127 Carica papaya evm.TU.supercontig_11.127 N
gene13452-v1.0-hybrid Fragaria vesca gene13452-v1.0-hybrid N
Gorai.006G183000 Gossypium raimondii Gorai.006G183000 N
Gorai.012G114700 Gossypium raimondii Gorai.012G114700 N
Ca_10636 Cicer arietinum Ca_10636 N
MDP0000269977 Malus domestica MDP0000269977 N
MDP0000296708 Malus domestica MDP0000296708 N
SapurV1A.0001s0490 Salix purpurea SapurV1A.0001s0490 N
SapurV1A.0541s0070 Salix purpurea SapurV1A.0541s0070 N
SapurV1A.1378s0050 Salix purpurea SapurV1A.1378s0050 N
SapurV1A.1496s0030 Salix purpurea SapurV1A.1496s0030 N
Thhalv10015815m.g Eutrema salsugineum Thhalv10015815m.g N
PK23483.1 Cannabis sativa PK23483.1 N
chr2.CM0803.380.nc Lotus japonicus chr2.CM0803.380.nc N
GLYMA01G35370 Glycine max GLYMA01G35370 N
GT-3B Arabidopsis thaliana AT2G38250 N
Bo3g001460 Brassica oleracea Bo3g001460 N
Bo3g032310 Brassica oleracea Bo3g032310 N
Bo4g029680 Brassica oleracea Bo4g029680 N
Bo9g186070 Brassica oleracea Bo9g186070 N
Bra000046 Brassica rapa Bra000046 N
Bra005127 Brassica rapa Bra005127 N
Bra005688 Brassica rapa Bra005688 N
fgenesh2_kg.6__73__AT5G01380.1 Arabidopsis lyrata fgenesh2_kg.6__73__AT5G01380.1 N
Al_scaffold_0004_2382 Arabidopsis lyrata Al_scaffold_0004_2382 N
MTR_4g015680 Medicago truncatula MTR_4g015680 N
MTR_5g026540 Medicago truncatula MTR_5g026540 N
PGSC0003DMG400030246 Solanum tuberosum PGSC0003DMG400030246 N
POPTR_0001s01210 Populus trichocarpa POPTR_0001s01210 N
POPTR_0006s10240 Populus trichocarpa POPTR_0006s10240 N
POPTR_0016s12470 Populus trichocarpa POPTR_0016s12470 N
Solyc09g005560.2 Solanum lycopersicum Solyc09g005560.2 N
TCM_021682 Theobroma cacao TCM_021682 N
VIT_08s0105g00400 Vitis vinifera VIT_08s0105g00400 N