Carubv10028173m.g (Capsella rubella)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Carubv10028173m.g T257843_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
FLC
M06990_2.00 		Arabidopsis thaliana
WWDMYNDWWWWGGAAASW
WSTTTCCWWWWHNRKHWW		 Dap-seq
OMalley et al.(2016)
AGL25_col_a 		0.771 0.771
FLC
M06991_2.00 		Arabidopsis thaliana
WCYHAAAAWGGAAAS
STTTCCWTTTTDRGW		 Dap-seq
OMalley et al.(2016)
AGL25_colamp_a 		0.771 0.771
AGL27
M08145_2.00 		Arabidopsis thaliana
MCMAAAATRGAAAB
VTTTCYATTTTKGK		 ChIP-seq
Mathelier et al.(2014)
MA1012.1 		0.771 0.771
FLC
M08147_2.00 		Arabidopsis thaliana
NNWWDCYVAAAWWRGAAAVHH
DDBTTTCYWWTTTBRGHWWNN		 ChIP-seq
Mathelier et al.(2014)
MA0558.1 		0.771 0.771
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10028173m MADS box 10 57

Links

Other MADS box family TFs
Other Capsella rubella TFs

41 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AGL27 Arabidopsis thaliana AT1G77080 D 0.787
FLC Arabidopsis thaliana AT5G10140 D 0.771
Bra031886 Brassica rapa Bra031886 I 0.830
Thhalv10014726m.g Eutrema salsugineum Thhalv10014726m.g I 0.771
Bra031888 Brassica rapa Bra031888 I 0.723
MAF1 Arabidopsis lyrata fgenesh2_kg.2__2000__AT1G77080.2 I 0.771
fgenesh2_kg.233__4__AT5G65050.3 Arabidopsis lyrata fgenesh2_kg.233__4__AT5G65050.3 I 0.729
fgenesh2_kg.8__2543__AT5G65050.2 Arabidopsis lyrata fgenesh2_kg.8__2543__AT5G65050.2 I 0.723
GLYMA08G11110 Glycine max GLYMA08G11110 I 0.708
FLC Arabidopsis lyrata scaffold_601028.1 I 0.771
Traes_4BL_9A17EA3B7 Triticum aestivum Traes_4BL_9A17EA3B7 I 0.724
Bostr.0568s0285 Boechera stricta Bostr.0568s0285 I 0.750
Bostr.13175s0088 Boechera stricta Bostr.13175s0088 I 0.750
Bostr.18351s0063 Boechera stricta Bostr.18351s0063 I 0.771
Cagra.0450s0030 Capsella grandiflora Cagra.0450s0030 I 0.750
Cagra.0917s0078 Capsella grandiflora Cagra.0917s0078 I 0.896
Cagra.0917s0080 Capsella grandiflora Cagra.0917s0080 I 0.979
Cagra.0917s0081 Capsella grandiflora Cagra.0917s0081 I 0.729
Cagra.1085s0045 Capsella grandiflora Cagra.1085s0045 I 0.771
Carubv10020979m.g Capsella rubella Carubv10020979m.g I 0.750
Thhalv10004949m.g Eutrema salsugineum Thhalv10004949m.g I 0.875
MAF4 Arabidopsis lyrata Al_scaffold_0008_3055 I 0.875
Bo3g100570 Brassica oleracea Bo3g100570 I 0.809
AGL31 Arabidopsis thaliana AT5G65050 I 0.750
MAF3 Arabidopsis thaliana AT5G65060 I 0.750
MAF4 Arabidopsis thaliana AT5G65070 I 0.875
MAF5 Arabidopsis thaliana AT5G65080 I 0.894
Bo01054s010 Brassica oleracea Bo01054s010 I 0.875
Bo13628s010 Brassica oleracea Bo13628s010 I 0.771
Bo3g005470 Brassica oleracea Bo3g005470 I 0.750
Bo3g024250 Brassica oleracea Bo3g024250 I 0.750
Bo3g100540 Brassica oleracea Bo3g100540 I 0.830
Bra031884 Brassica rapa Bra031884 I 0.896
Bo9g173370 Brassica oleracea Bo9g173370 I 0.750
Bo9g173400 Brassica oleracea Bo9g173400 I 0.771
Bra006051 Brassica rapa Bra006051 I 0.771
Bra009055 Brassica rapa Bra009055 I 0.771
Bra022771 Brassica rapa Bra022771 I 0.771
Bra024350 Brassica rapa Bra024350 I 0.809
Bra024351 Brassica rapa Bra024351 I 0.812
Bra028599 Brassica rapa Bra028599 I 0.750