CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
evm.TU.contig_24864.2
(
Carica papaya
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
evm.TU.contig_24864.2
T258031_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
evm.TU.contig_24864.2
MADS box
2
42
TKKKKSYFQEKEEEFMKKVSELSMLCKVKACEIIYSPYDWQ
Links
Other
MADS box
family TFs
Other
Carica papaya
TFs
6 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
evm.TU.contig_25253.3
Carica papaya
evm.TU.contig_25253.3
N
0.960
evm.TU.contig_28448.2
Carica papaya
evm.TU.contig_28448.2
N
1.000
evm.TU.contig_35795
Carica papaya
evm.TU.contig_35795
N
0.850
evm.TU.contig_35890
Carica papaya
evm.TU.contig_35890
N
0.825
evm.TU.contig_43908
Carica papaya
evm.TU.contig_43908
N
1.000
evm.TU.supercontig_185.4
Carica papaya
evm.TU.supercontig_185.4
N
1.000