evm.TU.contig_44957 (Carica papaya)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 evm.TU.contig_44957 T258134_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.733 0.733
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
evm.TU.contig_44957.1 MADS box 10 55

Links

Other MADS box family TFs
Other Carica papaya TFs

93 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
irf5.L Xenopus laevis XB-GENE-998629 D
IRF5 Oryctolagus cuniculus ENSOCUG00000010101 D
Irf5 Mus musculus ENSMUSG00000029771 D
IRF6 Meleagris gallopavo ENSMGAG00000004431 D
IRF6 Gallus gallus ENSGALG00000001405 D
IRF5 Homo sapiens ENSG00000128604 D
irf6.2 Xenopus tropicalis XB-GENE-5910331 D
ENSPSIG00000003597 Pelodiscus sinensis ENSPSIG00000003597 I
IRF5 Sus scrofa ENSSSCG00000016573 I
IRF6 Sus scrofa ENSSSCG00000015612 I
ENSSHAG00000006683 Sarcophilus harrisii ENSSHAG00000006683 I
irf6.S Xenopus laevis XB-GENE-876421 I
Irf5 Rattus norvegicus ENSRNOG00000007437 I
IRF5 Pteropus vampyrus ENSPVAG00000015756 I
IRF5 Pan troglodytes ENSPTRG00000019675 I
ENSSTOG00000004858 Ictidomys tridecemlineatus ENSSTOG00000004858 I
ENSPPYG00000017989 Pongo abelii ENSPPYG00000017989 I
ENSPFOG00000013528 Poecilia formosa ENSPFOG00000013528 I
irf5 Xenopus tropicalis XB-GENE-998624 I
ENSPANG00000018384 Papio anubis ENSPANG00000018384 I
IRF5 Ochotona princeps ENSOPRG00000006148 I
ENSONIG00000007600 Oreochromis niloticus ENSONIG00000007600 I
IRF5 Otolemur garnettii ENSOGAG00000009608 I
IRF6 Ornithorhynchus anatinus ENSOANG00000013718 I
Pvit_15428 Pogona vitticeps Pvit_15428 I
IRF6 Taeniopygia guttata ENSTGUG00000001485 I
irf5 Tetraodon nigroviridis ENSTNIG00000003346 I
irf5 Takifugu rubripes ENSTRUG00000000641 I
ENSXMAG00000013056 Xiphophorus maculatus ENSXMAG00000013056 I
irf6.2.L Xenopus laevis XB-GENE-5910427 I
Afo_R001981 Aptenodytes forsteri Afo_R001981 I
Alligator_sinensis_CCG003696.1 Alligator sinensis Alligator_sinensis_CCG003696.1 I
Alligator_sinensis_CCG004564.1 Alligator sinensis Alligator_sinensis_CCG004564.1 I
Alligator_sinensis_CCG015719.1 Alligator sinensis Alligator_sinensis_CCG015719.1 I
Cmyd_10002838 Chelonia mydas Cmyd_10002838 I
Cmyd_10010684 Chelonia mydas Cmyd_10010684 I
ENSP00000349770-D1 Bos grunniens ENSP00000349770-D1 I
ENSP00000349770 Macaca fascicularis ENSP00000349770 I
Myotis_brandtii_IRF5_10012830 Myotis brandtii Myotis_brandtii_IRF5_10012830 I
Pvit_14327 Pogona vitticeps Pvit_14327 I
ENSCSAG00000009970 Chlorocebus sabaeus ENSCSAG00000009970 I
irf5 Gasterosteus aculeatus ENSGACG00000000695 I
IRF5 Felis catus ENSFCAG00000000956 I
ENSFALG00000000504 Ficedula albicollis ENSFALG00000000504 I
IRF5 Echinops telfairi ENSETEG00000002100 I
IRF5 Equus caballus ENSECAG00000009902 I
Irf5 Dipodomys ordii ENSDORG00000010627 I
IRF5 Dasypus novemcinctus ENSDNOG00000013370 I
irf5 Danio rerio ENSDARG00000045681 I
IRF5 Gorilla gorilla ENSGGOG00000012013 I
IRF5 Cavia porcellus ENSCPOG00000000246 I
IRF5 Callithrix jacchus ENSCJAG00000018061 I
IRF5 Canis familiaris ENSCAFG00000001611 I
IRF5 Bos taurus ENSBTAG00000004989 I
ENSAPLG00000009319 Anas platyrhynchos ENSAPLG00000009319 I
ENSAPLG00000006203 Anas platyrhynchos ENSAPLG00000006203 I
ENSAMEG00000005109 Ailuropoda melanoleuca ENSAMEG00000005109 I
IRF5 Microcebus murinus ENSMICG00000000138 I
IRF6 Anolis carolinensis ENSACAG00000005931 I
IRF5 Ornithorhynchus anatinus ENSOANG00000011449 I
ENSNLEG00000012454 Nomascus leucogenys ENSNLEG00000012454 I
ENSMPUG00000006034 Mustela putorius furo ENSMPUG00000006034 I
IRF5 Monodelphis domestica ENSMODG00000014710 I
IRF6 Monodelphis domestica ENSMODG00000002539 I
IRF5 Macaca mulatta ENSMMUG00000018478 I
IRF5 Myotis lucifugus ENSMLUG00000001406 I
ENSOARG00000003908 Ovis aries ENSOARG00000003908 I
ENSMEUG00000014941 Macropus eugenii ENSMEUG00000014941 I
ENSMEUG00000002435 Macropus eugenii ENSMEUG00000002435 I
ENSLOCG00000015563 Lepisosteus oculatus ENSLOCG00000015563 I
IRF5 Loxodonta africana ENSLAFG00000021568 I
ENSLACG00000018600 Latimeria chalumnae ENSLACG00000018600 I
ENSLACG00000005750 Latimeria chalumnae ENSLACG00000005750 I
ENSGMOG00000007264 Gadus morhua ENSGMOG00000007264 I