Thhalv10019516m.g (Eutrema salsugineum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Thhalv10019516m.g T259154_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.723 0.723
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10019516m MADS box 10 57

Links

Other MADS box family TFs
Other Eutrema salsugineum TFs

35 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Hdx Mus musculus ENSMUSG00000034551 D
HDX Homo sapiens ENSG00000165259 D
HDX Tursiops truncatus ENSTTRG00000000100 I
hdx Oryzias latipes ENSORLG00000008466 I
ENSPANG00000014327 Papio anubis ENSPANG00000014327 I
ENSPFOG00000004291 Poecilia formosa ENSPFOG00000004291 I
ENSPMAG00000004328 Petromyzon marinus ENSPMAG00000004328 I
ENSPPYG00000020514 Pongo abelii ENSPPYG00000020514 I
ENSPSIG00000003320 Pelodiscus sinensis ENSPSIG00000003320 I
HDX Pan troglodytes ENSPTRG00000022065 I
HDX Pteropus vampyrus ENSPVAG00000015095 I
Hdx Rattus norvegicus ENSRNOG00000037799 I
ENSSHAG00000014376 Sarcophilus harrisii ENSSHAG00000014376 I
HDX Taeniopygia guttata ENSTGUG00000002499 I
rps6kal Tetraodon nigroviridis ENSTNIG00000015774 I
hdx Takifugu rubripes ENSTRUG00000008150 I
ENSTSYG00000009619 Tarsius syrichta ENSTSYG00000009619 I
HDX Otolemur garnettii ENSOGAG00000031446 I
HDX Vicugna pacos ENSVPAG00000003255 I
ENSXMAG00000011901 Xiphophorus maculatus ENSXMAG00000011901 I
Aan_R004747 Calypte anna Aan_R004747 I
Afo_R014150 Aptenodytes forsteri Afo_R014150 I
Alligator_sinensis_CCG017359.1 Alligator sinensis Alligator_sinensis_CCG017359.1 I
Brh_R002803 Buceros rhinoceros Brh_R002803 I
Cmyd_10021519 Chelonia mydas Cmyd_10021519 I
ENSP00000297977 Macaca fascicularis ENSP00000297977 I
Gfo_R008526 Geospiza fortis Gfo_R008526 I
Myotis_brandtii_HDX_10020373 Myotis brandtii Myotis_brandtii_HDX_10020373 I
Ogr06876 Ophisaurus gracilis Ogr06876 I
Pvit_02951 Pogona vitticeps Pvit_02951 I
hdx Xenopus tropicalis XB-GENE-853748 I
HDX Gorilla gorilla ENSGGOG00000005551 I
ENSAPLG00000007946 Anas platyrhynchos ENSAPLG00000007946 I
HDX Canis familiaris ENSCAFG00000017380 I
HDX Callithrix jacchus ENSCJAG00000008295 I
HDX Cavia porcellus ENSCPOG00000014501 I
ENSCSAG00000010546 Chlorocebus sabaeus ENSCSAG00000010546 I
hdx Danio rerio ENSDARG00000079382 I
HDX Equus caballus ENSECAG00000024862 I
HDX Erinaceus europaeus ENSEEUG00000011626 I
HDX Echinops telfairi ENSETEG00000018031 I
ENSFALG00000004050 Ficedula albicollis ENSFALG00000004050 I
HDX Felis catus ENSFCAG00000005781 I
hdx Gasterosteus aculeatus ENSGACG00000018543 I
HDX Gallus gallus ENSGALG00000007041 I
ENSONIG00000017662 Oreochromis niloticus ENSONIG00000017662 I
ENSGMOG00000004501 Gadus morhua ENSGMOG00000004501 I
ENSLACG00000001553 Latimeria chalumnae ENSLACG00000001553 I
HDX Loxodonta africana ENSLAFG00000028655 I
ENSLOCG00000015046 Lepisosteus oculatus ENSLOCG00000015046 I
ENSMEUG00000003811 Macropus eugenii ENSMEUG00000003811 I
HDX Meleagris gallopavo ENSMGAG00000004732 I
HDX Macaca mulatta ENSMMUG00000020536 I
HDX Monodelphis domestica ENSMODG00000014307 I
ENSMPUG00000006315 Mustela putorius furo ENSMPUG00000006315 I
ENSNLEG00000002624 Nomascus leucogenys ENSNLEG00000002624 I
ENSOARG00000001832 Ovis aries ENSOARG00000001832 I
HDX Oryctolagus cuniculus ENSOCUG00000000903 I
HDX Anolis carolinensis ENSACAG00000014116 I