LjSGA_019451.1 (Lotus japonicus)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 LjSGA_019451.1 T259370_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL15
M06992_2.00 		Arabidopsis thaliana
WNTTWCCHAAWDWRGAAAN
NTTTCYWHWTTDGGWAANW		 Dap-seq
OMalley et al.(2016)
AGL15_col_a 		0.792 0.792
AGL15
M06993_2.00 		Arabidopsis thaliana
DNTTWCCHAAWDDRGAAANHH
DDNTTTCYHHWTTDGGWAANH		 Dap-seq
OMalley et al.(2016)
AGL15_colamp_a 		0.792 0.792
AGL15
M10927_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL15_01 		0.792 0.792
AGL15
M10928_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL15_02 		0.792 0.792
AGL16
M06987_2.00 		Arabidopsis thaliana
TWCCHAAWDDGGWAA
TTWCCHHWTTDGGWA		 Dap-seq
OMalley et al.(2016)
AGL16_col_a 		0.771 0.771
AGL16
M06988_2.00 		Arabidopsis thaliana
WDWNTTWCCHWAWWDGGAAAS
STTTCCHWWTWDGGWAANWHW		 Dap-seq
OMalley et al.(2016)
AGL16_colamp_a 		0.771 0.771
SVP
M06984_2.00 		Arabidopsis thaliana
DDCCVAAWANGGHAA
TTDCCNTWTTBGGHH		 Dap-seq
OMalley et al.(2016)
SVP_colamp_v3b 		0.750 0.750
SVP
M06985_2.00 		Arabidopsis thaliana
CCMAAWANGGWAANW
WNTTWCCNTWTTKGG		 Dap-seq
OMalley et al.(2016)
SVP_col_v3b 		0.750 0.750
SVP
M08424_2.00 		Arabidopsis thaliana
NWWHCCMAAAADGGAAARHH
DDYTTTCCHTTTTKGGDWWN		 ChIP-chip
Mathelier et al.(2014)
MA0555.1 		0.750 0.750
SOC1
M08425_2.00 		Arabidopsis thaliana
CCAAAAAWRGAAAND
HNTTTCYWTTTTTGG		 ChIP-chip
Mathelier et al.(2014)
MA0554.1 		0.750 0.750
SOC1
M10915_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL20_01 		0.750 0.750
Q9ATE3_PETHY
M11008_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP28_01 		0.750 0.750
M17_MAIZE
M10959_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$M17_01 		0.750 0.750
AGL6
M06986_2.00 		Arabidopsis thaliana
TTWCCHAAAAWRGWAANWW
WWNTTWCYWTTTTDGGWAA		 Dap-seq
OMalley et al.(2016)
AGL6_col_a 		0.729 0.729
squamosa
M02697_2.00 		Antirrhinum majus
MYAWAWAWRGHAAN
NTTDCYWTWTWTRK		 SELEX
Mathelier et al.(2014)
MA0082.1 		0.729 0.729
SEP1
M02696_2.00 		Arabidopsis thaliana
NDWNCCAWWWWTRGHAWB
VWTDCYAWWWWTGGNWHN		 SELEX
Mathelier et al.(2014)
MA0584.1 		0.729 0.729
SEP3
M08143_2.00 		Arabidopsis thaliana
CCAAAAAWRGN
NCYWTTTTTGG		 ChIP-seq
Mathelier et al.(2014)
MA0563.1 		0.729 0.729
SEP1
M10929_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL2_01 		0.729 0.729
SEP1
M10930_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL2_02 		0.729 0.729
SEP3
M10902_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL9_01 		0.729 0.729
Q9LEI1_HORVU
M10984_2.00 		Hordeum vulgare Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BM7_01 		0.729 0.729
AGL9_PETHY
M10993_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP2_01 		0.729 0.729
Q9ATE8_PETHY
M11011_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP21_01 		0.729 0.729
Q9ATE7_PETHY
M11010_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP22_01 		0.729 0.729
Q9ATE6_PETHY
M11009_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP23_01 		0.729 0.729
Q9ATF3_PETHY
M11015_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP4_01 		0.729 0.729
Q9ATF2_PETHY
M11014_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP5_01 		0.729 0.729
O82084_MALDO
M11018_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS1_01 		0.729 0.729
MADS1
M10969_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS1_02 		0.729 0.729
Q40591_TOBAC
M11002_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS1_03 		0.729 0.729
Q6UGQ8_PETHY
M11005_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS12_01 		0.729 0.729
Q7X9I6_MALDO
M11023_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS12_02 		0.729 0.729
MAD17_ORYSJ
M10961_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS17_01 		0.729 0.729
MADS50
M10968_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS50_01 		0.729 0.729
MADS5
M10970_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS5_02 		0.729 0.729
MADS6
M10967_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS6_01 		0.729 0.729
MADS7
M10975_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS7_02 		0.729 0.729
MADS8
M10976_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS8_01 		0.729 0.729
Q9SBA6_MALDO
M11028_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS8_02 		0.729 0.729
Q38742_ANTMA
M11000_2.00 		Antirrhinum majus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$SQUA_01 		0.729 0.729
AGL42
M06995_2.00 		Arabidopsis thaliana
RATGATG
CATCATY		 Dap-seq
OMalley et al.(2016)
AGL42_col_a 		0.708 0.708
AGL12
M10906_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL12_01 		0.708 0.708
Q9LEH9_HORVU
M10983_2.00 		Hordeum vulgare Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BM9_01 		0.708 0.708
Q9ATE9_PETHY
M11012_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP20_01 		0.708 0.708
Q9ATF1_PETHY
M11013_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP9_01 		0.708 0.708
O82699_MALDO
M11022_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS11_01 		0.708 0.708
Q9ST54_MALDO
M11029_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS3_04 		0.708 0.708
Q9LM09_TOBAC
M11016_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS4_01 		0.708 0.708
O82695_MALDO
M11019_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS5_01 		0.708 0.708
O82697_MALDO
M11020_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS7_01 		0.708 0.708
Solyc05g012020.2
M10986_2.00 		Solanum lycopersicum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$RIN_01 		0.708 0.708
Solyc05g012020.2
M10987_2.00 		Solanum lycopersicum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$RIN_Q2_01 		0.708 0.708
Solyc05g012020.2
M10988_2.00 		Solanum lycopersicum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$RIN_Q2 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
LjSGA_019451.1 MADS box 10 57

Links

Other MADS box family TFs
Other Lotus japonicus TFs

992 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PV08_00049 Exophiala spinifera PV08_00049 N
TRIVIDRAFT_223962 Trichoderma virens TRIVIDRAFT_223962 N
TRIREDRAFT_52841 Trichoderma reesei TRIREDRAFT_52841 N
TRIATDRAFT_238142 Trichoderma atroviride TRIATDRAFT_238142 N
THITE_2115093 Thielavia terrestris THITE_2115093 N
SEPMUDRAFT_148866 Sphaerulina musiva SEPMUDRAFT_148866 N
PV11_00147 Exophiala sideris PV11_00147 N
PV10_07497 Exophiala mesophila PV10_07497 N
PV09_03090 Verruconis gallopava PV09_03090 N
UREG_02672 Uncinocarpus reesii UREG_02672 N
PV07_04335 Cladophialophora immunda PV07_04335 N
PV06_01443 Exophiala oligosperma PV06_01443 N
PV05_04616 Exophiala xenobiotica PV05_04616 N
PV04_05931 Capronia semiimmersa PV04_05931 N
PDE_04503 Penicillium oxalicum PDE_04503 N
PABG_07803 Paracoccidioides brasiliensis PABG_07803 N
PAAG_08396 Paracoccidioides sp lutzii PAAG_08396 N
NechaG72345 Fusarium solani NechaG72345 N
estExt_Genewise1Plus.C_590020 Mycosphaerella fijiensis estExt_Genewise1Plus.C_590020 N
Kwal_17681 Kluyveromyces waltii Kwal_17681 N
KLTH0E08778g Kluyveromyces thermotolerans KLTH0E08778g N
fgenesh1_pm.00795_#_71 Aspergillus carbonarius fgenesh1_pm.00795_#_71 N
estExt_Genewise1.C_32092 Cryphonectria parasitica estExt_Genewise1.C_32092 N
AB02376.1 Alternaria brassicicola AB02376.1 N
NCU08000 Neurospora crassa NCU08000 N
fgenesh1_pg.C_chr_4000614 Mycosphaerella graminicola fgenesh1_pg.C_chr_4000614 N
estExt_Genewise1Plus.C_sca_82_chr10_2_00666 Nectria haematococca estExt_Genewise1Plus.C_sca_82_chr10_2_00666 N
MYCTH_2298696 Myceliophthora thermophila MYCTH_2298696 N
estExt_Genewise1Plus.C_30389 Neurospora discreta estExt_Genewise1Plus.C_30389 N
e_gw1.3.1055.1 Cochliobolus heterostrophus C5 e_gw1.3.1055.1 N
Z519_07768 Cladophialophora bantiana Z519_07768 N
Z518_08246 Rhinocladiella mackenziei Z518_08246 N
YALI0_D12628g Yarrowia lipolytica YALI0_D12628g N
VHEMI00485 Torrubiella hemipterigena VHEMI00485 N
V499_05441 Pseudogymnoascus pannorum V499_05441 N
ATEG_02243 Aspergillus terreus CADATEAG00000116 N
DOTSEDRAFT_71663 Dothistroma septosporum DOTSEDRAFT_71663 N
CPC735_062800 Coccidioides posadasii CPC735_062800 N
COCVIDRAFT_38655 Bipolaris victoriae COCVIDRAFT_38655 N
COCSADRAFT_191370 Bipolaris sorokiniana COCSADRAFT_191370 N
COCMIDRAFT_98604 Bipolaris oryzae COCMIDRAFT_98604 N
COCCADRAFT_28209 Bipolaris zeicola COCCADRAFT_28209 N
COCC4DRAFT_48711 Bipolaris maydis COCC4DRAFT_48711 N
CFIO01_10413 Colletotrichum fioriniae CFIO01_10413 N
EPUS_03180 Endocarpon pusillum EPUS_03180 N
ANIA_07050 Aspergillus nidulans CADANIAG00000421 N
Bcin15g03690 Botrytis cinerea Bcin15g03690 N
BBA_08712 Beauveria bassiana BBA_08712 N
BAUCODRAFT_76471 Baudoinia compniacensis BAUCODRAFT_76471 N
AUEXF2481DRAFT_43258 Aureobasidium subglaciale AUEXF2481DRAFT_43258 N
A1O1_03477 Capronia coronata A1O1_03477 N
SNOG_12765 Stagonospora nodorum SNOG_12765 N
HMPREF1120_07037 Exophiala dermatitidis HMPREF1120_07037 N
Mycgr3G92834 Zymoseptoria tritici Mycgr3G92834 N
MYCFIDRAFT_61348 Pseudocercospora fijiensis MYCFIDRAFT_61348 N
MGG_01836 Magnaporthe oryzae MGG_01836 N
MAPG_05005 Magnaporthe poae MAPG_05005 N
M438DRAFT_357635 Aureobasidium pullulans M438DRAFT_357635 N
M437DRAFT_75522 Aureobasidium melanogenum M437DRAFT_75522 N
KUCA_T00003965001 Kuraishia capsulata KUCA_T00003965001 N
KLTH0E08778g Lachancea thermotolerans KLTH0E08778g N
CIMG_08688 Coccidioides immitis CIMG_08688 N
H105_03019 Trichophyton soudanense H105_03019 N
H102_02999 Trichophyton rubrum H102_02999 N
GMDG_07239 Pseudogymnoascus destructans GMDG_07239 N
GGTG_08792 Gaeumannomyces graminis GGTG_08792 N
FOXG_04196 Fusarium oxysporum FOXG_04196 N
FGRRES_01936 Fusarium graminearum FGRRES_01936 N
EURHEDRAFT_416477 Aspergillus ruber EURHEDRAFT_416477 N