LjSGA_147985.1 (Lotus japonicus)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 LjSGA_147985.1 T259406_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.741 0.741
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
LjSGA_147985.1 MADS box 10 36

Links

Other MADS box family TFs
Other Lotus japonicus TFs

76 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AC214648.3_FG005 Zea mays AC214648.3_FG005 I
BGIOSGA018905 Oryza indica BGIOSGA018905 I
GLYMA10G35760 Glycine max GLYMA10G35760 I
GLYMA12G07650 Glycine max GLYMA12G07650 I
GLYMA13G40370 Glycine max GLYMA13G40370 I
GLYMA15G05030 Glycine max GLYMA15G05030 I
GLYMA20G31780 Glycine max GLYMA20G31780 I
GSMUA_Achr10G22970_001 Musa acuminata GSMUA_Achr10G22970_001 I
GSMUA_Achr6G33070_001 Musa acuminata GSMUA_Achr6G33070_001 I
GSMUA_Achr7G15500_001 Musa acuminata GSMUA_Achr7G15500_001 I
MTR_1g095850 Medicago truncatula MTR_1g095850 I
MTR_2g093310 Medicago truncatula MTR_2g093310 I
MTR_4g060950 Medicago truncatula MTR_4g060950 I
OB05G11740 Oryza brachyantha OB05G11740 I
ORUFI05G01750 Oryza rufipogon ORUFI05G01750 I
OS05G0123000 Oryza sativa OS05G0123000 I
PGSC0003DMG400007503 Solanum tuberosum PGSC0003DMG400007503 I
PGSC0003DMG400025400 Solanum tuberosum PGSC0003DMG400025400 I
POPTR_0008s04350 Populus trichocarpa POPTR_0008s04350 I
POPTR_0010s22470 Populus trichocarpa POPTR_0010s22470 I
PRUPE_ppa011528mg Prunus persica PRUPE_ppa011528mg I
PRUPE_ppa023989mg Prunus persica PRUPE_ppa023989mg I
Sb09g002190 Sorghum bicolor Sb09g002190 I
Solyc05g048740.2 Solanum lycopersicum Solyc05g048740.2 I
Solyc06g005090.2 Solanum lycopersicum Solyc06g005090.2 I
Solyc11g072470.1 Solanum lycopersicum Solyc11g072470.1 I
TCM_041094 Theobroma cacao TCM_041094 I
TCM_043081 Theobroma cacao TCM_043081 I
VIT_06s0004g03330 Vitis vinifera VIT_06s0004g03330 I
VIT_06s0004g03350 Vitis vinifera VIT_06s0004g03350 I
VIT_13s0019g03700 Vitis vinifera VIT_13s0019g03700 I
Ca_04287 Cicer arietinum Ca_04287 I
Ca_14605 Cicer arietinum Ca_14605 I
Cla000556 Citrullus lanatus Cla000556 I
Cla020379 Citrullus lanatus Cla020379 I
Pm000938 Prunus mume Pm000938 I
Pm018585 Prunus mume Pm018585 I
30111.m000703 Ricinus communis 30111.m000703 I
cassava11218.m1 Manihot esculenta cassava11218.m1 I
cassava40961.m1 Manihot esculenta cassava40961.m1 I
cassava819.valid.m1 Manihot esculenta cassava819.valid.m1 I
Cucsa.052720 Cucumis sativus Cucsa.052720 I
Ciclev10029283m.g Citrus clementina Ciclev10029283m.g I
Ciclev10033956m.g Citrus clementina Ciclev10033956m.g I
Eucgr.B02465 Eucalyptus grandis Eucgr.B02465 I
Eucgr.J01123 Eucalyptus grandis Eucgr.J01123 I
evm.TU.contig_40341.1 Carica papaya evm.TU.contig_40341.1 I
gene25294-v1.0-hybrid Fragaria vesca gene25294-v1.0-hybrid I
Gorai.001G129700 Gossypium raimondii Gorai.001G129700 I
Gorai.004G012800 Gossypium raimondii Gorai.004G012800 I
Gorai.006G120900 Gossypium raimondii Gorai.006G120900 I
Gorai.010G203800 Gossypium raimondii Gorai.010G203800 I
Gorai.013G002900 Gossypium raimondii Gorai.013G002900 I
Lus10011645.g Linum usitatissimum Lus10011645.g I
Lus10036130.g Linum usitatissimum Lus10036130.g I
Lus10040373.g Linum usitatissimum Lus10040373.g I
MDP0000123013 Malus domestica MDP0000123013 I
MDP0000151784 Malus domestica MDP0000151784 I
MDP0000218986 Malus domestica MDP0000218986 I
MDP0000318244 Malus domestica MDP0000318244 I
MDP0000319331 Malus domestica MDP0000319331 I
MDP0000822986 Malus domestica MDP0000822986 I
orange1.1g026556m.g Citrus sinensis orange1.1g026556m.g I
orange1.1g047491m.g Citrus sinensis orange1.1g047491m.g I
Pavir.Ca00718 Panicum virgatum Pavir.Ca00718 I
Pavir.J04684 Panicum virgatum Pavir.J04684 I
SapurV1A.0023s0430 Salix purpurea SapurV1A.0023s0430 I
SapurV1A.0038s0110 Salix purpurea SapurV1A.0038s0110 I
PK17019.1 Cannabis sativa PK17019.1 I
PK23777.1 Cannabis sativa PK23777.1 I
PK27389.1 Cannabis sativa PK27389.1 I
CM1887.100.nc Lotus japonicus CM1887.100.nc I
PDK_20s1376911g004 Phoenix dactylifera PDK_20s1376911g004 I
AMTR_s00080p00153120 Amborella trichopoda AMTR_s00080p00153120 N
LBD11 Arabidopsis thaliana AT2G28500 N
BGIOSGA010952 Oryza indica BGIOSGA010952 N
BGIOSGA038947 Oryza indica BGIOSGA038947 N
Bo01039s010 Brassica oleracea Bo01039s010 N
Bo3g040220 Brassica oleracea Bo3g040220 N
Bo4g165420 Brassica oleracea Bo4g165420 N
Bo5g008590 Brassica oleracea Bo5g008590 N
Bo8g112780 Brassica oleracea Bo8g112780 N
Bra000491 Brassica rapa Bra000491 N
Bra011942 Brassica rapa Bra011942 N
Bra018675 Brassica rapa Bra018675 N
Bra031599 Brassica rapa Bra031599 N
Bra035698 Brassica rapa Bra035698 N
BRADI1G65760 Brachypodium distachyon BRADI1G65760 N
F775_02335 Aegilops tauschii F775_02335 N
LBD1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1000623 N
LBD11 Arabidopsis lyrata fgenesh2_kg.4__820__AT2G28500.1 N
GLYMA11G15810 Glycine max GLYMA11G15810 N
GRMZM2G021095 Zea mays GRMZM2G021095 N
GRMZM2G145568 Zea mays GRMZM2G145568 N
GRMZM2G165805 Zea mays GRMZM2G165805 N
GSMUA_Achr3G17800_001 Musa acuminata GSMUA_Achr3G17800_001 N
GSMUA_Achr4G16790_001 Musa acuminata GSMUA_Achr4G16790_001 N
GSMUA_Achr8G09700_001 Musa acuminata GSMUA_Achr8G09700_001 N
LPERR03G11720 Leersia perrieri LPERR03G11720 N
LPERR05G01520 Leersia perrieri LPERR05G01520 N
MLOC_68570 Hordeum vulgare MLOC_68570 N
OB03G23270 Oryza brachyantha OB03G23270 N
OBART03G13260 Oryza barthii OBART03G13260 N
OBART05G01640 Oryza barthii OBART05G01640 N
OGLUM03G13350 Oryza glumaepatula OGLUM03G13350 N
OLONG_017777 Oryza longistaminata OLONG_017777 N
OMERI03G12370 Oryza meridionalis OMERI03G12370 N
OMERI05G01740 Oryza meridionalis OMERI05G01740 N
ONIVA03G14510 Oryza nivara ONIVA03G14510 N
OPUNC03G12790 Oryza punctata OPUNC03G12790 N
OPUNC05G01610 Oryza punctata OPUNC05G01610 N
ORGLA03G0128100 Oryza glaberrima ORGLA03G0128100 N
ORGLA05G0016500 Oryza glaberrima ORGLA05G0016500 N
ORUFI03G13900 Oryza rufipogon ORUFI03G13900 N
OS03G0287400 Oryza sativa OS03G0287400 N
PGSC0003DMG400004138 Solanum tuberosum PGSC0003DMG400004138 N
Sb01g038650 Sorghum bicolor Sb01g038650 N
Si024430m.g Setaria italica Si024430m.g N
Si037280m.g Setaria italica Si037280m.g N
Solyc04g050010.1 Solanum lycopersicum Solyc04g050010.1 N
Solyc06g075330.1 Solanum lycopersicum Solyc06g075330.1 N
Traes_1AS_26CB95294 Triticum aestivum Traes_1AS_26CB95294 N
Traes_1BS_CE38938A8 Triticum aestivum Traes_1BS_CE38938A8 N
Traes_1DS_A31FB6CB2 Triticum aestivum Traes_1DS_A31FB6CB2 N
Traes_4BL_97EDABD02 Triticum aestivum Traes_4BL_97EDABD02 N
TRIUR3_27720 Triticum urartu TRIUR3_27720 N
VIT_13s0019g03710 Vitis vinifera VIT_13s0019g03710 N
VIT_13s0019g03750 Vitis vinifera VIT_13s0019g03750 N
VIT_13s0019g03800 Vitis vinifera VIT_13s0019g03800 N
Ca_02507 Cicer arietinum Ca_02507 N
Cla005133 Citrullus lanatus Cla005133 N
Cla005134 Citrullus lanatus Cla005134 N
cassava16668.m1 Manihot esculenta cassava16668.m1 N
cassava44959.m1 Manihot esculenta cassava44959.m1 N
Cucsa.166030 Cucumis sativus Cucsa.166030 N
Cucsa.207400 Cucumis sativus Cucsa.207400 N
mgf015666m Mimulus guttatus mgf015666m N
mgf019622m Mimulus guttatus mgf019622m N
mgf022524m Mimulus guttatus mgf022524m N
Aquca_027_00112 Aquilegia coerulea Aquca_027_00112 N
Bostr.25219s0157 Boechera stricta Bostr.25219s0157 N
Bostr.27991s0074 Boechera stricta Bostr.27991s0074 N
Cagra.1671s0410 Capsella grandiflora Cagra.1671s0410 N
Cagra.9128s0007 Capsella grandiflora Cagra.9128s0007 N
Carubv10010390m.g Capsella rubella Carubv10010390m.g N
Carubv10023989m.g Capsella rubella Carubv10023989m.g N
Ciclev10032782m.g Citrus clementina Ciclev10032782m.g N
Eucgr.E02410 Eucalyptus grandis Eucgr.E02410 N
evm.TU.supercontig_53.26 Carica papaya evm.TU.supercontig_53.26 N
gene23226-v1.0-hybrid Fragaria vesca gene23226-v1.0-hybrid N
Gorai.012G094200 Gossypium raimondii Gorai.012G094200 N
Gorai.012G185900 Gossypium raimondii Gorai.012G185900 N
MDP0000879799 Malus domestica MDP0000879799 N
Pavir.Ia03612 Panicum virgatum Pavir.Ia03612 N
Pavir.Ib01336 Panicum virgatum Pavir.Ib01336 N
Thhalv10008781m.g Eutrema salsugineum Thhalv10008781m.g N
Thhalv10017165m.g Eutrema salsugineum Thhalv10017165m.g N
chr3.CM0246.260.nc Lotus japonicus chr3.CM0246.260.nc N