AMTR_s00004p00169140 (Amborella trichopoda)
MBD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF01429 (MBD) IPR001739 AMTR_s00004p00169140 T259878_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
ERM93673 MBD 22 110

Links

Other MBD family TFs
Other Amborella trichopoda TFs

62 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cucsa.096390 Cucumis sativus Cucsa.096390 N 0.726
Gorai.009G016600 Gossypium raimondii Gorai.009G016600 N 0.726
evm.TU.supercontig_10.263 Carica papaya evm.TU.supercontig_10.263 N
Ciclev10010753m.g Citrus clementina Ciclev10010753m.g N 0.793
Carubv10009517m.g Capsella rubella Carubv10009517m.g N
Cagra.2238s0088 Capsella grandiflora Cagra.2238s0088 N
Bostr.7128s0147 Boechera stricta Bostr.7128s0147 N
Aquca_020_00103 Aquilegia coerulea Aquca_020_00103 N 0.767
Cucsa.295070 Cucumis sativus Cucsa.295070 N
Cucsa.132180 Cucumis sativus Cucsa.132180 N 0.712
Gorai.010G062800 Gossypium raimondii Gorai.010G062800 N
cassava6704.valid.m1 Manihot esculenta cassava6704.valid.m1 N 0.712
cassava5958.m1 Manihot esculenta cassava5958.m1 N
cassava13513.valid.m1 Manihot esculenta cassava13513.valid.m1 N 0.743
cassava13512.valid.m1 Manihot esculenta cassava13512.valid.m1 N 0.743
29841.m002855 Ricinus communis 29841.m002855 N
Pm027560 Prunus mume Pm027560 N 0.808
Cla016961 Citrullus lanatus Cla016961 N 0.712
Cla012920 Citrullus lanatus Cla012920 N 0.740
MDP0000574053 Malus domestica MDP0000574053 N 0.808
chr4.CM0234.40.nc Lotus japonicus chr4.CM0234.40.nc N 0.808
chr3.CM0142.530.nd Lotus japonicus chr3.CM0142.530.nd N
PK24888.1 Cannabis sativa PK24888.1 N
PK04144.1 Cannabis sativa PK04144.1 N 0.808
SapurV1A.1100s0070 Salix purpurea SapurV1A.1100s0070 N 0.753
SapurV1A.0034s0480 Salix purpurea SapurV1A.0034s0480 N 0.753
Pavir.J29994 Panicum virgatum Pavir.J29994 N 0.726
Pavir.Ca02859 Panicum virgatum Pavir.Ca02859 N 0.753
orange1.1g022412m.g Citrus sinensis orange1.1g022412m.g N 0.797
Cla012423 Citrullus lanatus Cla012423 N
MDP0000375866 Malus domestica MDP0000375866 N 0.781
MDP0000301302 Malus domestica MDP0000301302 N
MDP0000248422 Malus domestica MDP0000248422 N 0.712
MDP0000152128 Malus domestica MDP0000152128 N 0.808
Lus10030108.g Linum usitatissimum Lus10030108.g N 0.712
Lus10019406.g Linum usitatissimum Lus10019406.g N 0.725
Lus10002168.g Linum usitatissimum Lus10002168.g N
Gorai.011G083900 Gossypium raimondii Gorai.011G083900 N
GLYMA06G30590 Glycine max GLYMA06G30590 N 0.795
OB12G26010 Oryza brachyantha OB12G26010 N 0.753
MTR_4g114785 Medicago truncatula MTR_4g114785 N
MTR_4g114770 Medicago truncatula MTR_4g114770 N 0.712
MTR_0339s0020 Medicago truncatula MTR_0339s0020 N
MTR_0339s0010 Medicago truncatula MTR_0339s0010 N
LPERR12G16300 Leersia perrieri LPERR12G16300 N 0.767
GRMZM2G022365 Zea mays GRMZM2G022365 N
GLYMA15G01040 Glycine max GLYMA15G01040 N 0.753
GLYMA13G44230 Glycine max GLYMA13G44230 N 0.753
OBART12G19140 Oryza barthii OBART12G19140 N 0.753
GLYMA06G30350 Glycine max GLYMA06G30350 N 0.784
GLYMA06G25310 Glycine max GLYMA06G25310 N 0.808
GLYMA04G23980 Glycine max GLYMA04G23980 N 0.808
GLYMA04G23780 Glycine max GLYMA04G23780 N 0.822
BRADI4G21540 Brachypodium distachyon BRADI4G21540 N
Bra016665 Brassica rapa Bra016665 N
Bo8g066360 Brassica oleracea Bo8g066360 N
BGIOSGA035814 Oryza indica BGIOSGA035814 N 0.753
POPTR_0018s12980 Populus trichocarpa POPTR_0018s12980 N 0.776
Ca_19192 Cicer arietinum Ca_19192 N 0.740
Ca_06682 Cicer arietinum Ca_06682 N 0.795
VIT_11s0016g05580 Vitis vinifera VIT_11s0016g05580 N 0.712
VIT_09s0002g06870 Vitis vinifera VIT_09s0002g06870 N 0.726
TCM_038107 Theobroma cacao TCM_038107 N 0.808
Solyc12g009590.1 Solanum lycopersicum Solyc12g009590.1 N 0.781
Solyc07g008170.2 Solanum lycopersicum Solyc07g008170.2 N 0.757
PRUPE_ppa009989mg Prunus persica PRUPE_ppa009989mg N 0.740
PRUPE_ppa008789mg Prunus persica PRUPE_ppa008789mg N 0.795
PGSC0003DMG400002913 Solanum tuberosum PGSC0003DMG400002913 N 0.781
OS12G0620400 Oryza sativa OS12G0620400 N 0.753
ORUFI12G21360 Oryza rufipogon ORUFI12G21360 N 0.753
ORGLA12G0164400 Oryza glaberrima ORGLA12G0164400 N 0.753
OPUNC12G17310 Oryza punctata OPUNC12G17310 N 0.767
ONIVA02G25900 Oryza nivara ONIVA02G25900 N 0.753
OMERI12G13490 Oryza meridionalis OMERI12G13490 N 0.767
OGLUM12G20810 Oryza glumaepatula OGLUM12G20810 N 0.753