Carubv10018085m.g (Capsella rubella)
MBD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01429 (MBD) IPR001739 Carubv10018085m.g T261466_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10018085m MBD 82 155

Links

Other MBD family TFs
Other Capsella rubella TFs

29 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
cassava29545.valid.m1 Manihot esculenta cassava29545.valid.m1 N 0.743
chr5.CM0909.10.nc Lotus japonicus chr5.CM0909.10.nc N 0.716
Thhalv10006277m.g Eutrema salsugineum Thhalv10006277m.g N 0.905
Thhalv10001805m.g Eutrema salsugineum Thhalv10001805m.g N 0.851
SapurV1A.0053s0440 Salix purpurea SapurV1A.0053s0440 N 0.757
orange1.1g029175m.g Citrus sinensis orange1.1g029175m.g N 0.703
Lus10042674.g Linum usitatissimum Lus10042674.g N 0.743
Lus10029631.g Linum usitatissimum Lus10029631.g N 0.757
Lus10027980.g Linum usitatissimum Lus10027980.g N 0.770
Lus10008176.g Linum usitatissimum Lus10008176.g N 0.757
evm.TU.supercontig_9.132 Carica papaya evm.TU.supercontig_9.132 N 0.716
Ciclev10022348m.g Citrus clementina Ciclev10022348m.g N 0.703
Cagra.0664s0040 Capsella grandiflora Cagra.0664s0040 N 1.000
Bostr.7867s0060 Boechera stricta Bostr.7867s0060 N 0.824
Bostr.13158s0305 Boechera stricta Bostr.13158s0305 N 0.973
MBD4 Arabidopsis thaliana AT3G63030 N 0.946
cassava29544.valid.m1 Manihot esculenta cassava29544.valid.m1 N 0.743
29703.m001533 Ricinus communis 29703.m001533 N 0.757
MBD1 Arabidopsis lyrata scaffold_702078.1 N 0.797
MBD4 Arabidopsis lyrata scaffold_503585.1 N 0.919
POPTR_0014s13300 Populus trichocarpa POPTR_0014s13300 N 0.757
POPTR_0002s22900 Populus trichocarpa POPTR_0002s22900 N 0.770
GLYMA10G02860 Glycine max GLYMA10G02860 N 0.703
GLYMA02G16930 Glycine max GLYMA02G16930 N 0.703
Bra040421 Brassica rapa Bra040421 N 0.863
Bra007723 Brassica rapa Bra007723 N 0.865
Bo8g098350 Brassica oleracea Bo8g098350 N 0.865
Bo4g098290 Brassica oleracea Bo4g098290 N 0.849
MBD1 Arabidopsis thaliana AT4G22745 N 0.784