PHR2 (Oryza indica)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 BGIOSGA025605 T266921_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PHR1
M02329_2.00 		Oryza sativa
NWKATNCBNN
NNVGNATMWN		 PBM
Weirauch et al.(2014)
pTH7755 		0.789 0.915
PHR1
M02302_2.00 		Arabidopsis thaliana
NWKATNCBNN
NNVGNATMWN		 PBM
Weirauch et al.(2014)
pTH7249 		0.771 0.894
PHL1
M02310_2.00 		Arabidopsis thaliana
NWKATNCBNN
NNVGNATMWN		 PBM
Weirauch et al.(2014)
pTH7122 		0.740 0.851
PHL1
M07132_2.00 		Arabidopsis thaliana
MDRGAATATTCBNWN
NWNVGAATATTCYHK		 Dap-seq
OMalley et al.(2016)
At5g29000_col_a 		0.740 0.851
AT2G20400
M07046_2.00 		Arabidopsis thaliana
NDNNDNHNNVDDDNNNHAWRGMATATTCB
VGAATATKCYWTDNNNHHHBNNDNHNNHN		 Dap-seq
OMalley et al.(2016)
AT2G20400_col_a 		0.730 0.894
AT2G20400
M07047_2.00 		Arabidopsis thaliana
RDRGAATATTCBNWD
HWNVGAATATTCYHY		 Dap-seq
OMalley et al.(2016)
AT2G20400_colamp_a 		0.730 0.894
PHL6
M02295_2.00 		Arabidopsis thaliana
NNWKATNCBN
NVGNATMWNN		 PBM
Weirauch et al.(2014)
pTH7071 		0.724 0.787
PHL6
M07083_2.00 		Arabidopsis thaliana
NDGAAAACH
DGTTTTCHN		 Dap-seq
OMalley et al.(2016)
At3g13040_col_b 		0.724 0.787
PHL7
M02292_2.00 		Arabidopsis thaliana
NWGATDCBNN
NNVGHATCWN		 PBM
Weirauch et al.(2014)
pTH7253 		0.723 0.809
PK10342.1
M02351_2.00 		Cannabis sativa
WAGATKCS
SGMATCTW		 PBM
Weirauch et al.(2014)
pTH9489 		0.723 0.809
PHL7
M07040_2.00 		Arabidopsis thaliana
DRNAKATTCBNHNNN
NNNDNVGAATMTNYH		 Dap-seq
OMalley et al.(2016)
At2g01060_colamp_a 		0.723 0.809
PHL7
M07041_2.00 		Arabidopsis thaliana
VGAATATTCBNHH
DDNVGAATATTCB		 Dap-seq
OMalley et al.(2016)
At2g01060_col 		0.723 0.809
AT1G14600
M01268_2.00 		Arabidopsis thaliana
NWAYATTCYN
NRGAATRTWN		 PBM
Lambert et al.(2019)
pTH11557 		0.691 0.745
KAN1
M00878_2.00 		Arabidopsis thaliana
NNRTNBNN
NNVNAYNN		 PBM
Franco-Zorrilla et al.(2014)
KAN1 		0.669 0.723
KAN1
M02308_2.00 		Arabidopsis thaliana
NDNDTAHNHN
NDNDTAHNHN		 PBM
Weirauch et al.(2014)
pTH7135 		0.669 0.723
KAN2
M07018_2.00 		Arabidopsis thaliana
HHHNDWATATTCTYH
DRAGAATATWHNDDD		 Dap-seq
OMalley et al.(2016)
KAN2_col_a 		0.669 0.723
KAN2
M07019_2.00 		Arabidopsis thaliana
NWWTATTCYYH
DRRGAATAWWN		 Dap-seq
OMalley et al.(2016)
KAN2_colamp_a 		0.669 0.723
PHL11
M07134_2.00 		Arabidopsis thaliana
NNRAAKATTCYHHN
NDDRGAATMTTYNN		 Dap-seq
OMalley et al.(2016)
AT5G45580_col_a 		0.663 0.745
PHL11
M07135_2.00 		Arabidopsis thaliana
NRAAKATTCYHHNN
NNDDRGAATMTTYN		 Dap-seq
OMalley et al.(2016)
AT5G45580_colamp_a 		0.663 0.745
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
BGIOSGA025605-PA Myb 248 299

Links

Other Myb/SANT family TFs
Other Oryza indica TFs

804 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MYB83 Arabidopsis thaliana AT3G08500 D
MYB46 Arabidopsis thaliana AT5G12870 D
AMTR_s00022p00252530 Amborella trichopoda AMTR_s00022p00252530 I
AtMYB50 Arabidopsis thaliana AT1G57560 I
MYB86 Arabidopsis thaliana AT5G26660 I
BGIOSGA001460 Oryza indica BGIOSGA001460 I
BGIOSGA020297 Oryza indica BGIOSGA020297 I
BGIOSGA036092 Oryza indica BGIOSGA036092 I
Bo2g010970 Brassica oleracea Bo2g010970 I
Bo2g156300 Brassica oleracea Bo2g156300 I
Bo3g008870 Brassica oleracea Bo3g008870 I
Bo3g061630 Brassica oleracea Bo3g061630 I
Bo5g009920 Brassica oleracea Bo5g009920 I
Bo5g139830 Brassica oleracea Bo5g139830 I
Bo7g095130 Brassica oleracea Bo7g095130 I
Bo8g095790 Brassica oleracea Bo8g095790 I
Bo9g010860 Brassica oleracea Bo9g010860 I
Bo9g169270 Brassica oleracea Bo9g169270 I
Bra001284 Brassica rapa Bra001284 I
Bra003443 Brassica rapa Bra003443 I
Bra006166 Brassica rapa Bra006166 I
Bra007588 Brassica rapa Bra007588 I
Bra008875 Brassica rapa Bra008875 I
Bra014446 Brassica rapa Bra014446 I
Bra020016 Brassica rapa Bra020016 I
Bra020526 Brassica rapa Bra020526 I
Bra029696 Brassica rapa Bra029696 I
Bra036588 Brassica rapa Bra036588 I
BRADI2G17982 Brachypodium distachyon BRADI2G17982 I
BRADI2G40620 Brachypodium distachyon BRADI2G40620 I
BRADI3G17165 Brachypodium distachyon BRADI3G17165 I
BRADI4G06317 Brachypodium distachyon BRADI4G06317 I
F775_01821 Aegilops tauschii F775_01821 I
F775_06561 Aegilops tauschii F775_06561 I
F775_28951 Aegilops tauschii F775_28951 I
AtMYB50 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1003728 I
MYB83 Arabidopsis lyrata fgenesh2_kg.3__848__AT3G08500.1 I
ATMYB86 Arabidopsis lyrata fgenesh2_kg.6__2630__AT5G26660.1 I
GLYMA11G14200 Glycine max GLYMA11G14200 I
GLYMA12G06180 Glycine max GLYMA12G06180 I
GLYMA12G36630 Glycine max GLYMA12G36630 I
GLYMA13G07020 Glycine max GLYMA13G07020 I
GLYMA13G27310 Glycine max GLYMA13G27310 I
GLYMA13G41470 Glycine max GLYMA13G41470 I
GLYMA15G03920 Glycine max GLYMA15G03920 I
GLYMA15G41810 Glycine max GLYMA15G41810 I
GLYMA19G05080 Glycine max GLYMA19G05080 I
GRMZM2G031323 Zea mays GRMZM2G031323 I
GRMZM2G064744 Zea mays GRMZM2G064744 I
GRMZM2G119693 Zea mays GRMZM2G119693 I
GRMZM2G166337 Zea mays GRMZM2G166337 I
GRMZM2G175232 Zea mays GRMZM2G175232 I
GSMUA_Achr10G08070_001 Musa acuminata GSMUA_Achr10G08070_001 I
GSMUA_Achr2G02970_001 Musa acuminata GSMUA_Achr2G02970_001 I
GSMUA_Achr2G07780_001 Musa acuminata GSMUA_Achr2G07780_001 I
GSMUA_Achr8G31350_001 Musa acuminata GSMUA_Achr8G31350_001 I
GSMUA_AchrUn_randomG21080_001 Musa acuminata GSMUA_AchrUn_randomG21080_001 I
LPERR07G15930 Leersia perrieri LPERR07G15930 I
MLOC_16981 Hordeum vulgare MLOC_16981 I
MLOC_6156 Hordeum vulgare MLOC_6156 I
MLOC_66577 Hordeum vulgare MLOC_66577 I
MTR_2g097910 Medicago truncatula MTR_2g097910 I
MTR_3g028740 Medicago truncatula MTR_3g028740 I
MTR_4g065017 Medicago truncatula MTR_4g065017 I
MTR_8g017390 Medicago truncatula MTR_8g017390 I
OB05G32030 Oryza brachyantha OB05G32030 I
OB07G24240 Oryza brachyantha OB07G24240 I
OB12G21380 Oryza brachyantha OB12G21380 I
OBART07G18450 Oryza barthii OBART07G18450 I
OBART12G13720 Oryza barthii OBART12G13720 I
OGLUM07G18250 Oryza glumaepatula OGLUM07G18250 I
OGLUM12G15400 Oryza glumaepatula OGLUM12G15400 I
OMERI05G21780 Oryza meridionalis OMERI05G21780 I
OMERI07G15370 Oryza meridionalis OMERI07G15370 I
OMERI12G09660 Oryza meridionalis OMERI12G09660 I
ONIVA05G29400 Oryza nivara ONIVA05G29400 I
ONIVA06G20400 Oryza nivara ONIVA06G20400 I
OPUNC01G19230 Oryza punctata OPUNC01G19230 I
OPUNC07G17410 Oryza punctata OPUNC07G17410 I
OPUNC12G12380 Oryza punctata OPUNC12G12380 I
ORGLA05G0210500 Oryza glaberrima ORGLA05G0210500 I
ORGLA07G0148800 Oryza glaberrima ORGLA07G0148800 I
ORGLA12G0120900 Oryza glaberrima ORGLA12G0120900 I
ORUFI01G21210 Oryza rufipogon ORUFI01G21210 I
ORUFI07G19200 Oryza rufipogon ORUFI07G19200 I
ORUFI12G15040 Oryza rufipogon ORUFI12G15040 I
OS05G0543600 Oryza sativa OS05G0543600 I
PGSC0003DMG400006868 Solanum tuberosum PGSC0003DMG400006868 I
PGSC0003DMG400007360 Solanum tuberosum PGSC0003DMG400007360 I
POPTR_0001s26590 Populus trichocarpa POPTR_0001s26590 I
POPTR_0001s27430 Populus trichocarpa POPTR_0001s27430 I
POPTR_0009s05860 Populus trichocarpa POPTR_0009s05860 I
POPTR_0009s06630 Populus trichocarpa POPTR_0009s06630 I
PRUPE_ppa009566mg Prunus persica PRUPE_ppa009566mg I
PRUPE_ppa016923mg Prunus persica PRUPE_ppa016923mg I
Sb03g024500 Sorghum bicolor Sb03g024500 I
Sb08g016620 Sorghum bicolor Sb08g016620 I
Sb09g027200 Sorghum bicolor Sb09g027200 I
ATMYB46 Arabidopsis lyrata scaffold_601291.1 I
Si022730m.g Setaria italica Si022730m.g I
Si024786m.g Setaria italica Si024786m.g I
Si030273m.g Setaria italica Si030273m.g I
Solyc01g087130.2 Solanum lycopersicum Solyc01g087130.2 I
Solyc11g065840.1 Solanum lycopersicum Solyc11g065840.1 I
TCM_005885 Theobroma cacao TCM_005885 I
TCM_040694 Theobroma cacao TCM_040694 I
TRAES3BF071400020CFD_g Triticum aestivum TRAES3BF071400020CFD_g I
Traes_5BS_2CB91C54A Triticum aestivum Traes_5BS_2CB91C54A I
Traes_5DS_AACA2EBA3 Triticum aestivum Traes_5DS_AACA2EBA3 I
Traes_7AL_04D939077 Triticum aestivum Traes_7AL_04D939077 I
Traes_7DL_5BD0D4BD1 Triticum aestivum Traes_7DL_5BD0D4BD1 I
TRIUR3_24104 Triticum urartu TRIUR3_24104 I
TRIUR3_27020 Triticum urartu TRIUR3_27020 I
TRIUR3_33254 Triticum urartu TRIUR3_33254 I
VIT_05s0020g01100 Vitis vinifera VIT_05s0020g01100 I
VIT_06s0004g02110 Vitis vinifera VIT_06s0004g02110 I
MYB83 Vitis vinifera VIT_13s0064g00960 I
Ca_07460 Cicer arietinum Ca_07460 I
Cla008683 Citrullus lanatus Cla008683 I
Cla012793 Citrullus lanatus Cla012793 I
Cla017541 Citrullus lanatus Cla017541 I
Pm012272 Prunus mume Pm012272 I
Pm016295 Prunus mume Pm016295 I
cassava24925.valid.m1 Manihot esculenta cassava24925.valid.m1 I
cassava30676.valid.m1 Manihot esculenta cassava30676.valid.m1 I
cassava32908.m1 Manihot esculenta cassava32908.m1 I
cassava39861.m1 Manihot esculenta cassava39861.m1 I
cassava44907.m1 Manihot esculenta cassava44907.m1 I
cassava5203.m1 Manihot esculenta cassava5203.m1 I
Cucsa.065530 Cucumis sativus Cucsa.065530 I
Cucsa.127860 Cucumis sativus Cucsa.127860 I
Cucsa.195180 Cucumis sativus Cucsa.195180 I
Cucsa.340960 Cucumis sativus Cucsa.340960 I
mgf019381m Mimulus guttatus mgf019381m I
mgf024753m Mimulus guttatus mgf024753m I
Aquca_014_00829 Aquilegia coerulea Aquca_014_00829 I
Bostr.22252s0219 Boechera stricta Bostr.22252s0219 I
Bostr.2902s0023 Boechera stricta Bostr.2902s0023 I
Bostr.29827s0161 Boechera stricta Bostr.29827s0161 I
Bostr.30057s0004 Boechera stricta Bostr.30057s0004 I
Cagra.10702s0006 Capsella grandiflora Cagra.10702s0006 I
Cagra.1535s0018 Capsella grandiflora Cagra.1535s0018 I
Cagra.23492s0001 Capsella grandiflora Cagra.23492s0001 I
Cagra.2991s0041 Capsella grandiflora Cagra.2991s0041 I
Carubv10001224m.g Capsella rubella Carubv10001224m.g I
Carubv10001573m.g Capsella rubella Carubv10001573m.g I
Carubv10014093m.g Capsella rubella Carubv10014093m.g I
Carubv10020714m.g Capsella rubella Carubv10020714m.g I
Carubv10024801m.g Capsella rubella Carubv10024801m.g I
Ciclev10017658m.g Citrus clementina Ciclev10017658m.g I
Ciclev10021268m.g Citrus clementina Ciclev10021268m.g I
Ciclev10033941m.g Citrus clementina Ciclev10033941m.g I
Eucgr.B03684 Eucalyptus grandis Eucgr.B03684 I
Eucgr.D02271 Eucalyptus grandis Eucgr.D02271 I
Eucgr.G03385 Eucalyptus grandis Eucgr.G03385 I
evm.TU.supercontig_6.280 Carica papaya evm.TU.supercontig_6.280 I
evm.TU.supercontig_640.1 Carica papaya evm.TU.supercontig_640.1 I
evm.TU.supercontig_84.59 Carica papaya evm.TU.supercontig_84.59 I
gene14666-v1.0-hybrid Fragaria vesca gene14666-v1.0-hybrid I
gene27001-v1.0-hybrid Fragaria vesca gene27001-v1.0-hybrid I
Gorai.001G138800 Gossypium raimondii Gorai.001G138800 I
Gorai.004G037300 Gossypium raimondii Gorai.004G037300 I
Gorai.004G172700 Gossypium raimondii Gorai.004G172700 I
Gorai.006G129100 Gossypium raimondii Gorai.006G129100 I
Gorai.013G251100 Gossypium raimondii Gorai.013G251100 I
Lus10002559.g Linum usitatissimum Lus10002559.g I
Lus10027369.g Linum usitatissimum Lus10027369.g I
Lus10029520.g Linum usitatissimum Lus10029520.g I
Lus10031281.g Linum usitatissimum Lus10031281.g I
Lus10031850.g Linum usitatissimum Lus10031850.g I
Lus10039610.g Linum usitatissimum Lus10039610.g I
MDP0000204495 Malus domestica MDP0000204495 I
MDP0000722954 Malus domestica MDP0000722954 I
MDP0000736994 Malus domestica MDP0000736994 I
orange1.1g019619m.g Citrus sinensis orange1.1g019619m.g I
orange1.1g021164m.g Citrus sinensis orange1.1g021164m.g I
orange1.1g021486m.g Citrus sinensis orange1.1g021486m.g I
Pavir.Ba00668 Panicum virgatum Pavir.Ba00668 I
Pavir.Ca00231 Panicum virgatum Pavir.Ca00231 I
Pavir.Ca01788 Panicum virgatum Pavir.Ca01788 I
Pavir.Ca02370 Panicum virgatum Pavir.Ca02370 I
Pavir.J18139 Panicum virgatum Pavir.J18139 I
Pavir.J19191 Panicum virgatum Pavir.J19191 I
Pavir.J20716 Panicum virgatum Pavir.J20716 I
SapurV1A.0027s0350 Salix purpurea SapurV1A.0027s0350 I
SapurV1A.0534s0230 Salix purpurea SapurV1A.0534s0230 I
SapurV1A.0925s0070 Salix purpurea SapurV1A.0925s0070 I
Thhalv10004450m.g Eutrema salsugineum Thhalv10004450m.g I
Thhalv10006126m.g Eutrema salsugineum Thhalv10006126m.g I
Thhalv10015560m.g Eutrema salsugineum Thhalv10015560m.g I
Thhalv10021052m.g Eutrema salsugineum Thhalv10021052m.g I
Thhalv10023601m.g Eutrema salsugineum Thhalv10023601m.g I
Thhalv10028778m.g Eutrema salsugineum Thhalv10028778m.g I
PK13930.1 Cannabis sativa PK13930.1 I
PK14287.1 Cannabis sativa PK14287.1 I
chr3.CM0049.330.nc Lotus japonicus chr3.CM0049.330.nc I
LjSGA_026563.1 Lotus japonicus LjSGA_026563.1 I
PDK_20s1844641g001 Phoenix dactylifera PDK_20s1844641g001 I
PDK_20s1854611g001 Phoenix dactylifera PDK_20s1854611g001 I