Bo1g082480 (Brassica oleracea)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bo1g082480 T267086_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
F3A4.140
M02299_2.00 		Arabidopsis thaliana
YAACBGYY
RRCVGTTR		 PBM
Weirauch et al.(2014)
pTH7112 		0.811 0.903
F3A4.140
M07095_2.00 		Arabidopsis thaliana
TAACBGYHWHNNHNN
NNDNNDWDRCVGTTA		 Dap-seq
OMalley et al.(2016)
MYB77_col_a 		0.811 0.903
F3A4.140
M07096_2.00 		Arabidopsis thaliana
AACCGYAACCSTAWHWWAMV
BKTWWDWTASGGTTRCGGTT		 Dap-seq
OMalley et al.(2016)
MYB77_colamp_a 		0.811 0.903
F3A4.140
M02701_2.00 		Arabidopsis thaliana
SYAACYGYCVHBN
NVDBGRCRGTTRS		 SELEX
Mathelier et al.(2014)
MA0575.1 		0.811 0.903
F3A4.140
M11044_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATMYB77_01 		0.811 0.903
MYB44
M01082_2.00 		Arabidopsis thaliana
HAACBRHHN
NDDYVGTTD		 PBM
Sullivan et al.(2014)
pTH7078 		0.759 0.849
MYB44
M07155_2.00 		Arabidopsis thaliana
HDTAACBGWHW
WDWCVGTTAHD		 Dap-seq
OMalley et al.(2016)
MYB44_colamp_a 		0.759 0.849
MYB44
M07156_2.00 		Arabidopsis thaliana
HAACBRWHWWAACBGHHWH
DWDDCVGTTWWDWYVGTTD		 Dap-seq
OMalley et al.(2016)
MYB44_col 		0.759 0.849
PK28565.1
M02357_2.00 		Cannabis sativa
TAACBGTY
RACVGTTA		 PBM
Weirauch et al.(2014)
pTH9653 		0.697 0.774
AtMYB70
M01071_2.00 		Arabidopsis thaliana
HAACBRHHN
NDDYVGTTD		 PBM
Sullivan et al.(2014)
pTH8588 		0.697 0.763
AtMYB70
M07048_2.00 		Arabidopsis thaliana
YAACBGWHWWAAMN
NKTTWWDWCVGTTR		 Dap-seq
OMalley et al.(2016)
MYB70_col_a 		0.697 0.763
MYB73
M07114_2.00 		Arabidopsis thaliana
TAACBGWHWHW
WDWDWCVGTTA		 Dap-seq
OMalley et al.(2016)
MYB73_col_a 		0.692 0.774
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo1g082480.1 Myb 46 92
Bo1g082480.1 Myb 98 143

Links

Other Myb/SANT family TFs
Other Brassica oleracea TFs

138 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ORGLA01G0291800 Oryza glaberrima ORGLA01G0291800 I 0.000
OS05G0478800 Oryza sativa OS05G0478800 I 0.000
OS05G0478400 Oryza sativa OS05G0478400 I 0.000
OS01G0820700 Oryza sativa OS01G0820700 I 0.000
ORUFI05G21600 Oryza rufipogon ORUFI05G21600 I 0.000
ORUFI05G21560 Oryza rufipogon ORUFI05G21560 I 0.000
ORUFI01G38660 Oryza rufipogon ORUFI01G38660 I 0.000
ORGLA11G0202000 Oryza glaberrima ORGLA11G0202000 I 0.000
ORGLA05G0177400 Oryza glaberrima ORGLA05G0177400 I 0.000
ORGLA05G0177200 Oryza glaberrima ORGLA05G0177200 I 0.000
PRUPE_ppa026704mg Prunus persica PRUPE_ppa026704mg I 0.000
OPUNC05G18030 Oryza punctata OPUNC05G18030 I 0.000
OPUNC05G18000 Oryza punctata OPUNC05G18000 I 0.000
OPUNC05G17980 Oryza punctata OPUNC05G17980 I 0.000
WRKY66 Arabidopsis thaliana AT1G80590 I 0.000
ONIVA05G21460 Oryza nivara ONIVA05G21460 I 0.000
ONIVA05G21440 Oryza nivara ONIVA05G21440 I 0.000
ONIVA01G40340 Oryza nivara ONIVA01G40340 I 0.000
OMERI05G18260 Oryza meridionalis OMERI05G18260 I 0.000
Bostr.26959s0259 Boechera stricta Bostr.26959s0259 I 0.000
PK03324.1 Cannabis sativa PK03324.1 I 0.000
SapurV1A.0914s0120 Salix purpurea SapurV1A.0914s0120 I 0.000
SapurV1A.0356s0010 Salix purpurea SapurV1A.0356s0010 I 0.000
Pavir.Gb01556 Panicum virgatum Pavir.Gb01556 I 0.000
Pavir.Ca00459 Panicum virgatum Pavir.Ca00459 I 0.000
Carubv10022162m.g Capsella rubella Carubv10022162m.g I 0.000
Bostr.26959s0262 Boechera stricta Bostr.26959s0262 I 0.000
Bostr.26959s0261 Boechera stricta Bostr.26959s0261 I 0.000
ONIVA11G01240 Oryza nivara ONIVA11G01240 I 0.000
cassava36286.valid.m1 Manihot esculenta cassava36286.valid.m1 I 0.000
Pm003013 Prunus mume Pm003013 I 0.000
Traes_3DL_48F7A19D2 Triticum aestivum Traes_3DL_48F7A19D2 I 0.000
TRAES3BF081400030CFD_g Triticum aestivum TRAES3BF081400030CFD_g I 0.000
Traes_3AL_2297D6E18 Triticum aestivum Traes_3AL_2297D6E18 I 0.000
TCM_019689 Theobroma cacao TCM_019689 I 0.000
Si012735m.g Setaria italica Si012735m.g I 0.000
Sb03g038180 Sorghum bicolor Sb03g038180 I 0.000
WRKY67 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2000969 I 0.000
OB05G27850 Oryza brachyantha OB05G27850 I 0.000
OB05G27830 Oryza brachyantha OB05G27830 I 0.000
OB01G44140 Oryza brachyantha OB01G44140 I 0.000
OMERI05G18250 Oryza meridionalis OMERI05G18250 I 0.000
LPERR05G16170 Leersia perrieri LPERR05G16170 I 0.000
LPERR05G16150 Leersia perrieri LPERR05G16150 I 0.000
GSMUA_Achr8G25110_001 Musa acuminata GSMUA_Achr8G25110_001 I 0.000
GSMUA_Achr7G22020_001 Musa acuminata GSMUA_Achr7G22020_001 I 0.000
GRMZM2G065290 Zea mays GRMZM2G065290 I 0.000
LPERR10G04210 Leersia perrieri LPERR10G04210 I 0.000
F775_23182 Aegilops tauschii F775_23182 I 0.000
BRADI4G44360 Brachypodium distachyon BRADI4G44360 I 0.000
BRADI2G53495 Brachypodium distachyon BRADI2G53495 I 0.000
BRADI1G63220 Brachypodium distachyon BRADI1G63220 I 0.000
BGIOSGA034612 Oryza indica BGIOSGA034612 I 0.000
BGIOSGA030346 Oryza indica BGIOSGA030346 I 0.000
BGIOSGA017860 Oryza indica BGIOSGA017860 I 0.000
BGIOSGA004703 Oryza indica BGIOSGA004703 I 0.000
OLONG_027124 Oryza longistaminata OLONG_027124 I 0.000
OGLUM05G21420 Oryza glumaepatula OGLUM05G21420 I 0.000
OGLUM05G21470 Oryza glumaepatula OGLUM05G21470 I 0.000
OGLUM05G21510 Oryza glumaepatula OGLUM05G21510 I 0.000
OGLUM11G00870 Oryza glumaepatula OGLUM11G00870 I 0.000
OBART11G01110 Oryza barthii OBART11G01110 I 0.000
OBART05G20340 Oryza barthii OBART05G20340 I 0.000
OMERI01G32480 Oryza meridionalis OMERI01G32480 I 0.000
OMERI05G18170 Oryza meridionalis OMERI05G18170 I 0.000
OBART01G35310 Oryza barthii OBART01G35310 I 0.000
OBART05G20330 Oryza barthii OBART05G20330 I 0.000
Pavir.J38024 Panicum virgatum Pavir.J38024 N 0.000
Pavir.J37617 Panicum virgatum Pavir.J37617 N 0.000
OMERI10G04260 Oryza meridionalis OMERI10G04260 N 0.000
OPUNC01G34270 Oryza punctata OPUNC01G34270 N 0.000
BRADI4G44370 Brachypodium distachyon BRADI4G44370 N 0.000
F775_02479 Aegilops tauschii F775_02479 N 0.000
TRIUR3_26571 Triticum urartu TRIUR3_26571 N 0.000
TRIUR3_20905 Triticum urartu TRIUR3_20905 N 0.000
OPUNC10G05310 Oryza punctata OPUNC10G05310 N 0.000
GRMZM2G400559 Zea mays GRMZM2G400559 N 0.000
OPUNC11G00980 Oryza punctata OPUNC11G00980 N 0.000
OPUNC12G00990 Oryza punctata OPUNC12G00990 N 0.000
Si005138m.g Setaria italica Si005138m.g N 0.000
Sb05g001220 Sorghum bicolor Sb05g001220 N 0.000
OBART10G05920 Oryza barthii OBART10G05920 N 0.000
LPERR11G00970 Leersia perrieri LPERR11G00970 N 0.000
LPERR12G01080 Leersia perrieri LPERR12G01080 N 0.000
ORGLA10G0049300 Oryza glaberrima ORGLA10G0049300 N 0.000