Bra021860 (Brassica rapa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bra021860 T267942_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ASR3
M07053_2.00 		Arabidopsis thaliana
DNNNNHHWNDRCCCTWAW
WTWAGGGYHNWDDNNNNH		 Dap-seq
OMalley et al.(2016)
AT2G33550_col_a 		0.870 0.978
ASR3
M07054_2.00 		Arabidopsis thaliana
NHWDDTRCCCTWMW
WKWAGGGYAHHWDN		 Dap-seq
OMalley et al.(2016)
AT2G33550_colamp_a 		0.870 0.978
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra021860.1-P Myb 47 114

Links

Other Myb/SANT family TFs
Other Brassica rapa TFs

38 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSOPRG00000010556 Ochotona princeps ENSOPRG00000010556 N
gw.78.158.1 Branchiostoma floridae gw.78.158.1 N
e_gw.78.157.1 Branchiostoma floridae e_gw.78.157.1 N
e_gw.78.156.1 Branchiostoma floridae e_gw.78.156.1 N
ENSP00000296096-D1 Bos grunniens ENSP00000296096-D1 N
Cmyd_10002847 Chelonia mydas Cmyd_10002847 N
SPU_016445 Strongylocentrotus purpuratus SPU_016445 N
LotgiG70568 Lottia gigantea LotgiG70568 N
TCF23 Tursiops truncatus ENSTTRG00000005255 N
ENSSTOG00000015523 Ictidomys tridecemlineatus ENSSTOG00000015523 N
TCF23 Sus scrofa ENSSSCG00000027409 N
ENSSHAG00000012462 Sarcophilus harrisii ENSSHAG00000012462 N
Tcf23 Rattus norvegicus ENSRNOG00000025736 N
ENSPVAG00000015152 Pteropus vampyrus ENSPVAG00000015152 N
CGI_10026943 Crassostrea gigas CGI_10026943 N
ENSOCUG00000008655 Oryctolagus cuniculus ENSOCUG00000008655 N
ENSOARG00000019168 Ovis aries ENSOARG00000019168 N
Tcf23 Mus musculus ENSMUSG00000006642 N
TCF23 Monodelphis domestica ENSMODG00000015714 N
ENSMEUG00000010665 Macropus eugenii ENSMEUG00000010665 N
TCF23 Loxodonta africana ENSLAFG00000014587 N
TCF23 Equus caballus ENSECAG00000021374 N
Tcf23 Dipodomys ordii ENSDORG00000014403 N
ENSCPOG00000003785 Cavia porcellus ENSCPOG00000003785 N
TCF23 Canis familiaris ENSCAFG00000030192 N
TCF23 Bos taurus ENSBTAG00000014813 N
ENSAMEG00000001827 Ailuropoda melanoleuca ENSAMEG00000001827 N