POPTR_0001s30750 (Populus trichocarpa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 POPTR_0001s30750 T278203_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB73
M07114_2.00 		Arabidopsis thaliana
TAACBGWHWHW
WDWDWCVGTTA		 Dap-seq
OMalley et al.(2016)
MYB73_col_a 		0.711 0.753
AtMYB70
M01071_2.00 		Arabidopsis thaliana
HAACBRHHN
NDDYVGTTD		 PBM
Sullivan et al.(2014)
pTH8588 		0.700 0.763
AtMYB70
M07048_2.00 		Arabidopsis thaliana
YAACBGWHWWAAMN
NKTTWWDWCVGTTR		 Dap-seq
OMalley et al.(2016)
MYB70_col_a 		0.700 0.763
PK28565.1
M02357_2.00 		Cannabis sativa
TAACBGTY
RACVGTTA		 PBM
Weirauch et al.(2014)
pTH9653 		0.691 0.763
MYB44
M01082_2.00 		Arabidopsis thaliana
HAACBRHHN
NDDYVGTTD		 PBM
Sullivan et al.(2014)
pTH7078 		0.669 0.720
MYB44
M07155_2.00 		Arabidopsis thaliana
HDTAACBGWHW
WDWCVGTTAHD		 Dap-seq
OMalley et al.(2016)
MYB44_colamp_a 		0.669 0.720
MYB44
M07156_2.00 		Arabidopsis thaliana
HAACBRWHWWAACBGHHWH
DWDDCVGTTWWDWYVGTTD		 Dap-seq
OMalley et al.(2016)
MYB44_col 		0.669 0.720
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0001s30750.1 Myb 7 53
POPTR_0001s30750.1 Myb 59 104

Links

Other Myb/SANT family TFs
Other Populus trichocarpa TFs

118 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AtMYB70 Arabidopsis thaliana AT2G23290 D 0.700
MYB73 Arabidopsis thaliana AT4G37260 D 0.711
MYB44 Arabidopsis thaliana AT5G67300 D 0.669
PK28565.1 Cannabis sativa PK28565.1 D 0.691
AMTR_s00006p00225600 Amborella trichopoda AMTR_s00006p00225600 I 0.688
MYB109 Arabidopsis thaliana AT3G55730 I 0.662
BGIOSGA000485 Oryza indica BGIOSGA000485 I 0.705
Bo1g004900 Brassica oleracea Bo1g004900 I 0.711
Bo2g167960 Brassica oleracea Bo2g167960 I 0.669
Bo3g153550 Brassica oleracea Bo3g153550 I 0.708
Bo4g151410 Brassica oleracea Bo4g151410 I 0.693
Bo7g063830 Brassica oleracea Bo7g063830 I 0.669
Bo7g118450 Brassica oleracea Bo7g118450 I 0.663
Bra007186 Brassica rapa Bra007186 I 0.662
Bra010593 Brassica rapa Bra010593 I 0.684
Bra011749 Brassica rapa Bra011749 I 0.711
Bra012149 Brassica rapa Bra012149 I 0.669
Bra032176 Brassica rapa Bra032176 I 0.693
BRADI2G55040 Brachypodium distachyon BRADI2G55040 I 0.669
AtMYB70 Arabidopsis lyrata fgenesh2_kg.4__260__AT2G23290.1 I 0.700
GLYMA01G39740 Glycine max GLYMA01G39740 I 0.691
GLYMA05G21220 Glycine max GLYMA05G21220 I 0.665
GLYMA11G05550 Glycine max GLYMA11G05550 I 0.691
GLYMA14G09540 Glycine max GLYMA14G09540 I 0.665
GRMZM2G169316 Zea mays GRMZM2G169316 I 0.671
GSMUA_Achr1G09750_001 Musa acuminata GSMUA_Achr1G09750_001 I 0.665
GSMUA_Achr4G09450_001 Musa acuminata GSMUA_Achr4G09450_001 I 0.667
GSMUA_Achr6G33470_001 Musa acuminata GSMUA_Achr6G33470_001 I 0.663
GSMUA_AchrUn_randomG01280_001 Musa acuminata GSMUA_AchrUn_randomG01280_001 I 0.679
LPERR01G32110 Leersia perrieri LPERR01G32110 I 0.714
MTR_4g094982 Medicago truncatula MTR_4g094982 I 0.699
MTR_5g016510 Medicago truncatula MTR_5g016510 I 0.691
OB01G46120 Oryza brachyantha OB01G46120 I 0.705
OBART01G37390 Oryza barthii OBART01G37390 I 0.705
OGLUM01G41330 Oryza glumaepatula OGLUM01G41330 I 0.705
OLONG_001357 Oryza longistaminata OLONG_001357 I 0.705
OMERI01G34370 Oryza meridionalis OMERI01G34370 I 0.708
ONIVA01G42300 Oryza nivara ONIVA01G42300 I 0.705
OPUNC01G36300 Oryza punctata OPUNC01G36300 I 0.705
ORGLA01G0312200 Oryza glaberrima ORGLA01G0312200 I 0.705
ORUFI01G40770 Oryza rufipogon ORUFI01G40770 I 0.705
OS01G0850400 Oryza sativa OS01G0850400 I 0.705
PGSC0003DMG400003316 Solanum tuberosum PGSC0003DMG400003316 I 0.757
PGSC0003DMG400024983 Solanum tuberosum PGSC0003DMG400024983 I 0.716
POPTR_0005s18620 Populus trichocarpa POPTR_0005s18620 I 0.664
POPTR_0009s09890 Populus trichocarpa POPTR_0009s09890 I 0.839
PRUPE_ppa008450mg Prunus persica PRUPE_ppa008450mg I 0.691
PRUPE_ppa023154mg Prunus persica PRUPE_ppa023154mg I 0.673
Sb03g039950 Sorghum bicolor Sb03g039950 I 0.662
ATMYBR1 Arabidopsis lyrata scaffold_803378.1 I 0.669
Si001686m.g Setaria italica Si001686m.g I 0.665
Solyc02g092930.1 Solanum lycopersicum Solyc02g092930.1 I 0.716
Solyc04g078420.1 Solanum lycopersicum Solyc04g078420.1 I 0.757
TCM_000696 Theobroma cacao TCM_000696 I 0.716
TCM_007138 Theobroma cacao TCM_007138 I 0.672
VIT_07s0129g01050 Vitis vinifera VIT_07s0129g01050 I 0.688
VIT_13s0019g03200 Vitis vinifera VIT_13s0019g03200 I 0.677
VIT_18s0001g09850 Vitis vinifera VIT_18s0001g09850 I 0.691
Ca_02182 Cicer arietinum Ca_02182 I 0.688
Cla006872 Citrullus lanatus Cla006872 I 0.680
Cla020946 Citrullus lanatus Cla020946 I 0.670
Cla022947 Citrullus lanatus Cla022947 I 0.679
Pm021211 Prunus mume Pm021211 I 0.673
29970.m000987 Ricinus communis 29970.m000987 I 0.691
cassava1242.valid.m1 Manihot esculenta cassava1242.valid.m1 I 0.663
cassava2215.valid.m1 Manihot esculenta cassava2215.valid.m1 I 0.691
cassava43120.valid.m1 Manihot esculenta cassava43120.valid.m1 I 0.691
Cucsa.073130 Cucumis sativus Cucsa.073130 I 0.680
Cucsa.352560 Cucumis sativus Cucsa.352560 I 0.670
Cucsa.395890 Cucumis sativus Cucsa.395890 I 0.679
e_gw1.9.342.1 Physcomitrella patens e_gw1.9.342.1 I 0.676
mgf002573m Mimulus guttatus mgf002573m I 0.701
mgf014089m Mimulus guttatus mgf014089m I 0.734
mgf023922m Mimulus guttatus mgf023922m I 0.681
Aquca_007_00776 Aquilegia coerulea Aquca_007_00776 I 0.721
Aquca_009_00809 Aquilegia coerulea Aquca_009_00809 I 0.695
Aquca_045_00169 Aquilegia coerulea Aquca_045_00169 I 0.664
Aquca_083_00054 Aquilegia coerulea Aquca_083_00054 I 0.716
Bostr.0568s0154 Boechera stricta Bostr.0568s0154 I 0.669
Bostr.22252s0145 Boechera stricta Bostr.22252s0145 I 0.661
Bostr.23794s0078 Boechera stricta Bostr.23794s0078 I 0.668
Bostr.27895s0157 Boechera stricta Bostr.27895s0157 I 0.700
Bostr.7867s1585 Boechera stricta Bostr.7867s1585 I 0.711
Cagra.0342s0017 Capsella grandiflora Cagra.0342s0017 I 0.669
Cagra.10445s0001 Capsella grandiflora Cagra.10445s0001 I 0.675
Cagra.1232s0025 Capsella grandiflora Cagra.1232s0025 I 0.711
Carubv10007638m.g Capsella rubella Carubv10007638m.g I 0.711
Carubv10023414m.g Capsella rubella Carubv10023414m.g I 0.675
Carubv10023692m.g Capsella rubella Carubv10023692m.g I 0.700
Carubv10027659m.g Capsella rubella Carubv10027659m.g I 0.669
Ciclev10026107m.g Citrus clementina Ciclev10026107m.g I 0.691
Eucgr.H02226 Eucalyptus grandis Eucgr.H02226 I 0.713
Eucgr.K03010 Eucalyptus grandis Eucgr.K03010 I 0.688
evm.TU.supercontig_56.79 Carica papaya evm.TU.supercontig_56.79 I 0.685
evm.TU.supercontig_6.98 Carica papaya evm.TU.supercontig_6.98 I 0.716
gene24027-v1.0-hybrid Fragaria vesca gene24027-v1.0-hybrid I 0.700
gene26289-v1.0-hybrid Fragaria vesca gene26289-v1.0-hybrid I 0.699
Gorai.002G009300 Gossypium raimondii Gorai.002G009300 I 0.693
Gorai.005G234900 Gossypium raimondii Gorai.005G234900 I 0.694
Gorai.007G055600 Gossypium raimondii Gorai.007G055600 I 0.716
Gorai.007G218100 Gossypium raimondii Gorai.007G218100 I 0.716
Lus10010260.g Linum usitatissimum Lus10010260.g I 0.691
Lus10030336.g Linum usitatissimum Lus10030336.g I 0.691
MDP0000196986 Malus domestica MDP0000196986 I 0.691
MDP0000232454 Malus domestica MDP0000232454 I 0.691
orange1.1g021071m.g Citrus sinensis orange1.1g021071m.g I 0.691
Pavir.Ea03398 Panicum virgatum Pavir.Ea03398 I 0.671
Pavir.J13677 Panicum virgatum Pavir.J13677 I 0.671
SapurV1A.0262s0270 Salix purpurea SapurV1A.0262s0270 I 0.673
SapurV1A.0339s0020 Salix purpurea SapurV1A.0339s0020 I 0.686
SapurV1A.0597s0060 Salix purpurea SapurV1A.0597s0060 I 0.673
SapurV1A.0708s0130 Salix purpurea SapurV1A.0708s0130 I 0.806
SapurV1A.0709s0060 Salix purpurea SapurV1A.0709s0060 I 0.673
Thhalv10000438m.g Eutrema salsugineum Thhalv10000438m.g I 0.713
Thhalv10004676m.g Eutrema salsugineum Thhalv10004676m.g I 0.669
Thhalv10025742m.g Eutrema salsugineum Thhalv10025742m.g I 0.711
chr2.CM0250.240.nd Lotus japonicus chr2.CM0250.240.nd I 0.691
CM0528.210.nd Lotus japonicus CM0528.210.nd I 0.661