POPTR_0005s14480 (Populus trichocarpa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 POPTR_0005s14480 T278285_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB113
M07026_2.00 		Arabidopsis thaliana
VTAACKRAHTH
DADTYMGTTAB		 Dap-seq
OMalley et al.(2016)
MYB113_col_a 		0.714 0.819
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0005s14480.1 Myb 9 56
POPTR_0005s14480.1 Myb 62 111

Links

Other Myb/SANT family TFs
Other Populus trichocarpa TFs

81 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MYB113 Arabidopsis thaliana AT1G66370 D 0.714
Eucgr.J01569 Eucalyptus grandis Eucgr.J01569 I 0.670
27763.m000042 Ricinus communis 27763.m000042 I 0.698
Eucgr.J01553 Eucalyptus grandis Eucgr.J01553 I 0.670
Eucgr.H04157 Eucalyptus grandis Eucgr.H04157 I 0.676
Eucgr.F02842 Eucalyptus grandis Eucgr.F02842 I 0.713
Ciclev10013455m.g Citrus clementina Ciclev10013455m.g I 0.721
Carubv10020888m.g Capsella rubella Carubv10020888m.g I 0.668
Carubv10020856m.g Capsella rubella Carubv10020856m.g I 0.698
Cagra.2629s0007 Capsella grandiflora Cagra.2629s0007 I 0.715
Cagra.2400s0001 Capsella grandiflora Cagra.2400s0001 I 0.698
Cagra.0463s0008 Capsella grandiflora Cagra.0463s0008 I 0.683
Cagra.0463s0007 Capsella grandiflora Cagra.0463s0007 I 0.698
Cagra.0463s0006 Capsella grandiflora Cagra.0463s0006 I 0.689
Bostr.26959s0279 Boechera stricta Bostr.26959s0279 I 0.718
Aquca_047_00006 Aquilegia coerulea Aquca_047_00006 I 0.693
Aquca_015_00088 Aquilegia coerulea Aquca_015_00088 I 0.662
mgf022565m Mimulus guttatus mgf022565m I 0.694
mgf019317m Mimulus guttatus mgf019317m I 0.683
30128.m008730 Ricinus communis 30128.m008730 I 0.719
PK17827.1 Cannabis sativa PK17827.1 I 0.670
Lus10009130.g Linum usitatissimum Lus10009130.g I 0.744
MYB75 Arabidopsis thaliana AT1G56650 I 0.715
PK05760.1 Cannabis sativa PK05760.1 I 0.725
Thhalv10019041m.g Eutrema salsugineum Thhalv10019041m.g I 0.715
SapurV1A.0230s0260 Salix purpurea SapurV1A.0230s0260 I 0.853
SapurV1A.0230s0250 Salix purpurea SapurV1A.0230s0250 I 0.760
SapurV1A.0230s0240 Salix purpurea SapurV1A.0230s0240 I 0.737
Lus10042522.g Linum usitatissimum Lus10042522.g I 0.683
Lus10028514.g Linum usitatissimum Lus10028514.g I 0.717
Lus10028513.g Linum usitatissimum Lus10028513.g I 0.744
Eucgr.J01580 Eucalyptus grandis Eucgr.J01580 I 0.680
Lus10009129.g Linum usitatissimum Lus10009129.g I 0.717
Gorai.013G118300 Gossypium raimondii Gorai.013G118300 I 0.668
Gorai.007G268800 Gossypium raimondii Gorai.007G268800 I 0.666
Gorai.001G087400 Gossypium raimondii Gorai.001G087400 I 0.736
Gorai.001G087200 Gossypium raimondii Gorai.001G087200 I 0.736
gene31413-v1.0-hybrid Fragaria vesca gene31413-v1.0-hybrid I 0.667
evm.TU.supercontig_2742.1 Carica papaya evm.TU.supercontig_2742.1 I 0.673
evm.TU.supercontig_116.38 Carica papaya evm.TU.supercontig_116.38 I 0.673
Eucgr.J01586 Eucalyptus grandis Eucgr.J01586 I 0.680
MYB113 Arabidopsis lyrata fgenesh2_kg.2__869__AT1G66370.1 I 0.682
MTR_8g060940 Medicago truncatula MTR_8g060940 I 0.672
MTR_5g079290 Medicago truncatula MTR_5g079290 I 0.672
MTR_5g079220 Medicago truncatula MTR_5g079220 I 0.676
MTR_5g078950 Medicago truncatula MTR_5g078950 I 0.677
MTR_5g078860 Medicago truncatula MTR_5g078860 I 0.677
MTR_5g078800 Medicago truncatula MTR_5g078800 I 0.668
MTR_0001s0360 Medicago truncatula MTR_0001s0360 I 0.661
GLYMA19G02980 Glycine max GLYMA19G02980 I 0.664
GLYMA09G36966 Glycine max GLYMA09G36966 I 0.666
POPTR_0005s14450 Populus trichocarpa POPTR_0005s14450 I 0.855
PAP1 Arabidopsis lyrata fgenesh2_kg.1__4777__AT1G56650.1 I 0.715
Bra039763 Brassica rapa Bra039763 I 0.705
Bra004162 Brassica rapa Bra004162 I 0.715
Bra001917 Brassica rapa Bra001917 I 0.705
Bo6g100940 Brassica oleracea Bo6g100940 I 0.718
Bo6g099880 Brassica oleracea Bo6g099880 I 0.715
Bo00835s060 Brassica oleracea Bo00835s060 I 0.705
MYB90 Arabidopsis thaliana AT1G66390 I 0.715
MYB114 Arabidopsis thaliana AT1G66380 I 0.715
Solyc10g086290.1 Solanum lycopersicum Solyc10g086290.1 I 0.730
Pm029442 Prunus mume Pm029442 I 0.695
Pm029440 Prunus mume Pm029440 I 0.693
VIT_14s0006g01340 Vitis vinifera VIT_14s0006g01340 I 0.663
VIT_14s0006g01290 Vitis vinifera VIT_14s0006g01290 I 0.692
VIT_14s0006g01280 Vitis vinifera VIT_14s0006g01280 I 0.696
VIT_02s0033g00450 Vitis vinifera VIT_02s0033g00450 I 0.684
VIT_02s0033g00410 Vitis vinifera VIT_02s0033g00410 I 0.684
TCM_026054 Theobroma cacao TCM_026054 I 0.674
TCM_019192 Theobroma cacao TCM_019192 I 0.758
Pm029445 Prunus mume Pm029445 I 0.726
Solyc10g086270.1 Solanum lycopersicum Solyc10g086270.1 I 0.724
Solyc10g086260.1 Solanum lycopersicum Solyc10g086260.1 I 0.707
Solyc10g086250.1 Solanum lycopersicum Solyc10g086250.1 I 0.711
ATMYB90 Arabidopsis lyrata scaffold_201358.1 I 0.715
scaffold_201357.1 Arabidopsis lyrata scaffold_201357.1 I 0.710
PRUPE_ppa026640mg Prunus persica PRUPE_ppa026640mg I 0.690
POPTR_0005s14490 Populus trichocarpa POPTR_0005s14490 I 0.841
POPTR_0005s14470 Populus trichocarpa POPTR_0005s14470 I 0.873
POPTR_0005s14460 Populus trichocarpa POPTR_0005s14460 I 0.882