Cla009230 (Citrullus lanatus)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Cla009230 T283197_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SRM1
M02307_2.00 		Arabidopsis thaliana
NNHNATCNN
NNGATNDNN		 PBM
Weirauch et al.(2014)
pTH7080 		0.713 0.826
SRM1
M07121_2.00 		Arabidopsis thaliana
YCTTATCYWHW
WDWRGATAAGR		 Dap-seq
OMalley et al.(2016)
At5g08520_colamp_a 		0.713 0.826
SRM1
M07122_2.00 		Arabidopsis thaliana
YCTTATCYWHWWH
DWWDWRGATAAGR		 Dap-seq
OMalley et al.(2016)
At5g08520_col_b 		0.713 0.826
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla009230 Myb 9 58
Cla009230 Myb 122 167

Links

Other Myb/SANT family TFs
Other Citrullus lanatus TFs

64 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SRM1 Arabidopsis thaliana AT5G08520 D 0.713
Ca_19000 Cicer arietinum Ca_19000 I 0.740
PK13672.1 Cannabis sativa PK13672.1 I 0.766
Cla020348 Citrullus lanatus Cla020348 I 0.753
Pm006046 Prunus mume Pm006046 I 0.814
Pm017050 Prunus mume Pm017050 I 0.688
30131.m007263 Ricinus communis 30131.m007263 I 0.808
cassava18614.valid.m1 Manihot esculenta cassava18614.valid.m1 I 0.813
Cucsa.013870 Cucumis sativus Cucsa.013870 I 0.905
Cucsa.280970 Cucumis sativus Cucsa.280970 I 0.771
mgf009460m Mimulus guttatus mgf009460m I 0.724
Aquca_035_00057 Aquilegia coerulea Aquca_035_00057 I 0.811
Bostr.13129s0103 Boechera stricta Bostr.13129s0103 I 0.701
Cagra.1365s0066 Capsella grandiflora Cagra.1365s0066 I 0.743
Carubv10001525m.g Capsella rubella Carubv10001525m.g I 0.743
Ciclev10032259m.g Citrus clementina Ciclev10032259m.g I 0.837
Eucgr.G02591 Eucalyptus grandis Eucgr.G02591 I 0.771
evm.TU.supercontig_138.5 Carica papaya evm.TU.supercontig_138.5 I 0.797
gene23544-v1.0-hybrid Fragaria vesca gene23544-v1.0-hybrid I 0.688
Gorai.005G212900 Gossypium raimondii Gorai.005G212900 I 0.798
Gorai.008G147400 Gossypium raimondii Gorai.008G147400 I 0.798
Gorai.012G135600 Gossypium raimondii Gorai.012G135600 I 0.819
Gorai.013G067600 Gossypium raimondii Gorai.013G067600 I 0.789
Lus10013447.g Linum usitatissimum Lus10013447.g I 0.739
MDP0000289018 Malus domestica MDP0000289018 I 0.663
orange1.1g022439m.g Citrus sinensis orange1.1g022439m.g I 0.837
SapurV1A.0234s0050 Salix purpurea SapurV1A.0234s0050 I 0.824
SapurV1A.0333s0040 Salix purpurea SapurV1A.0333s0040 I 0.805
Thhalv10014203m.g Eutrema salsugineum Thhalv10014203m.g I 0.713
GSMUA_Achr9G23760_001 Musa acuminata GSMUA_Achr9G23760_001 I 0.775
GLYMA07G28310 Glycine max GLYMA07G28310 I 0.826
GLYMA08G40020 Glycine max GLYMA08G40020 I 0.819
GLYMA10G42450 Glycine max GLYMA10G42450 I 0.665
GLYMA18G18140 Glycine max GLYMA18G18140 I 0.819
GLYMA20G01450 Glycine max GLYMA20G01450 I 0.831
GLYMA20G24600 Glycine max GLYMA20G24600 I 0.665
GRMZM2G149958 Zea mays GRMZM2G149958 I 0.669
fgenesh2_kg.6__825__AT5G08520.1 Arabidopsis lyrata fgenesh2_kg.6__825__AT5G08520.1 I 0.708
Bra028654 Brassica rapa Bra028654 I 0.671
GSMUA_Achr1G17730_001 Musa acuminata GSMUA_Achr1G17730_001 I 0.817
GSMUA_Achr9G20620_001 Musa acuminata GSMUA_Achr9G20620_001 I 0.805
MTR_1g111830 Medicago truncatula MTR_1g111830 I 0.675
PGSC0003DMG400025303 Solanum tuberosum PGSC0003DMG400025303 I 0.714
Bo9g174380 Brassica oleracea Bo9g174380 I 0.665
PRUPE_ppa009396mg Prunus persica PRUPE_ppa009396mg I 0.852
PRUPE_ppa010926mg Prunus persica PRUPE_ppa010926mg I 0.688
Bo3g004970 Brassica oleracea Bo3g004970 I 0.682
Bo2g009130 Brassica oleracea Bo2g009130 I 0.682
Ca_05454 Cicer arietinum Ca_05454 I 0.665
TCM_007672 Theobroma cacao TCM_007672 I 0.798
VIT_10s0071g00660 Vitis vinifera VIT_10s0071g00660 I 0.813
AMTR_s00106p00065610 Amborella trichopoda AMTR_s00106p00065610 N 0.672
Pavir.Ga00233 Panicum virgatum Pavir.Ga00233 N 0.693
Pavir.Gb00055 Panicum virgatum Pavir.Gb00055 N 0.703
Lus10041001.g Linum usitatissimum Lus10041001.g N 0.721
gene00786-v1.0-hybrid Fragaria vesca gene00786-v1.0-hybrid N 0.733
Eucgr.J00349 Eucalyptus grandis Eucgr.J00349 N 0.729
GSMUA_Achr10G06880_001 Musa acuminata GSMUA_Achr10G06880_001 N 0.728
OB04G36550 Oryza brachyantha OB04G36550 N 0.663
gw1.13.182.1 Physcomitrella patens gw1.13.182.1 N 0.665
e_gw1.256.18.1 Physcomitrella patens e_gw1.256.18.1 N 0.665
Sb06g032880 Sorghum bicolor Sb06g032880 N 0.669
Si022762m.g Setaria italica Si022762m.g N 0.698
Solyc04g008870.2 Solanum lycopersicum Solyc04g008870.2 N 0.680