30131.m007263 (Ricinus communis)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 30131.m007263 T283877_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SRM1
M02307_2.00 		Arabidopsis thaliana
NNHNATCNN
NNGATNDNN		 PBM
Weirauch et al.(2014)
pTH7080 		0.749 0.848
SRM1
M07121_2.00 		Arabidopsis thaliana
YCTTATCYWHW
WDWRGATAAGR		 Dap-seq
OMalley et al.(2016)
At5g08520_colamp_a 		0.749 0.848
SRM1
M07122_2.00 		Arabidopsis thaliana
YCTTATCYWHWWH
DWWDWRGATAAGR		 Dap-seq
OMalley et al.(2016)
At5g08520_col_b 		0.749 0.848
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
30131.m007263 Myb 121 166

Links

Other Myb/SANT family TFs
Other Ricinus communis TFs

85 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MDP0000852271 Malus domestica MDP0000852271 I 0.000
Gorai.005G076200 Gossypium raimondii Gorai.005G076200 I 0.000
evm.TU.supercontig_26.135 Carica papaya evm.TU.supercontig_26.135 I 0.000
Gorai.009G260000 Gossypium raimondii Gorai.009G260000 I 0.000
Ciclev10000612m.g Citrus clementina Ciclev10000612m.g I 0.000
Lus10028713.g Linum usitatissimum Lus10028713.g I 0.000
MDP0000146969 Malus domestica MDP0000146969 I 0.000
cassava22173.valid.m1 Manihot esculenta cassava22173.valid.m1 I 0.000
cassava19069.valid.m1 Manihot esculenta cassava19069.valid.m1 I 0.000
MDP0000169485 Malus domestica MDP0000169485 I 0.000
Cla013854 Citrullus lanatus Cla013854 I 0.000
SapurV1A.0134s0420 Salix purpurea SapurV1A.0134s0420 I 0.000
VIT_18s0001g01820 Vitis vinifera VIT_18s0001g01820 I 0.000
TCM_036587 Theobroma cacao TCM_036587 I 0.000
SapurV1A.0348s0040 Salix purpurea SapurV1A.0348s0040 I 0.000
POPTR_0005s22180 Populus trichocarpa POPTR_0005s22180 I 0.000
POPTR_0002s06210 Populus trichocarpa POPTR_0002s06210 I 0.000
Aquca_017_00010 Aquilegia coerulea Aquca_017_00010 N 0.000
LjSGA_007769.1 Lotus japonicus LjSGA_007769.1 N 0.000
gene27539-v1.0-hybrid Fragaria vesca gene27539-v1.0-hybrid N 0.000
Eucgr.F02771 Eucalyptus grandis Eucgr.F02771 N 0.000
GLYMA20G31210 Glycine max GLYMA20G31210 N 0.000
Cucsa.364130 Cucumis sativus Cucsa.364130 N 0.000
Pm022358 Prunus mume Pm022358 N 0.000
Cla016588 Citrullus lanatus Cla016588 N 0.000
Ca_04337 Cicer arietinum Ca_04337 N 0.000
PRUPE_ppa003410mg Prunus persica PRUPE_ppa003410mg N 0.000
MTR_1g097300 Medicago truncatula MTR_1g097300 N 0.000