Cagra.2238s0052 (Capsella grandiflora)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Cagra.2238s0052 T286080_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TRFL5
M02285_2.00 		Arabidopsis thaliana
WGCCCTAN
NTAGGGCW		 PBM
Weirauch et al.(2014)
pTH7099 		0.825 0.867
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.2238s0052.1.p Myb 364 412

Links

Other Myb/SANT family TFs
Other Capsella grandiflora TFs

11 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TRFL5 Arabidopsis thaliana AT1G15720 D 0.825
Al_scaffold_0008_2302 Arabidopsis lyrata Al_scaffold_0008_2302 I 0.838
AT5G58340 Arabidopsis thaliana AT5G58340 I 0.838
Bo5g146770 Brassica oleracea Bo5g146770 I 0.771
Bo9g134990 Brassica oleracea Bo9g134990 I 0.838
Bra039470 Brassica rapa Bra039470 I 0.771
TRFL5 Arabidopsis lyrata fgenesh2_kg.1__1721__AT1G15720.1 I 0.889
Bostr.7128s0187 Boechera stricta Bostr.7128s0187 I 0.886
Carubv10011791m.g Capsella rubella Carubv10011791m.g I 0.909
Thhalv10013531m.g Eutrema salsugineum Thhalv10013531m.g I 0.820
Thhalv10022421m.g Eutrema salsugineum Thhalv10022421m.g I 0.780