Cagra.5249s0014 (Capsella grandiflora)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Cagra.5249s0014 T286163_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT5G04760
M02304_2.00 		Arabidopsis thaliana
NDGATAAGGN
NCCTTATCHN		 PBM
Weirauch et al.(2014)
pTH7079 		0.896 0.989
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.5249s0014.1.p Myb 3 51
Cagra.5249s0014.1.p Myb 97 144

Links

Other Myb/SANT family TFs
Other Capsella grandiflora TFs

29 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
cassava42744.valid.m1 Manihot esculenta cassava42744.valid.m1 I 0.000
BZIP46 Oryza sativa OS06G0211200 I 0.000
BGIOSGA005551 Oryza indica BGIOSGA005551 I 0.000
POPTR_0009s10400 Populus trichocarpa POPTR_0009s10400 I 0.000
Sb04g034190 Sorghum bicolor Sb04g034190 I 0.000
Sb10g007090 Sorghum bicolor Sb10g007090 I 0.000
Si006889m.g Setaria italica Si006889m.g I 0.000
Si017618m.g Setaria italica Si017618m.g I 0.000
Solyc11g044560.1 Solanum lycopersicum Solyc11g044560.1 I 0.000
cassava42743.valid.m1 Manihot esculenta cassava42743.valid.m1 I 0.000
PGSC0003DMG400022931 Solanum tuberosum PGSC0003DMG400022931 I 0.000
cassava42745.valid.m1 Manihot esculenta cassava42745.valid.m1 I 0.000
mgf020824m Mimulus guttatus mgf020824m I 0.000
Ciclev10028435m.g Citrus clementina Ciclev10028435m.g I 0.000
Gorai.005G237400 Gossypium raimondii Gorai.005G237400 I 0.000
Lus10014066.g Linum usitatissimum Lus10014066.g I 0.000
orange1.1g013197m.g Citrus sinensis orange1.1g013197m.g I 0.000
orange1.1g021624m.g Citrus sinensis orange1.1g021624m.g I 0.000
Pavir.Da01931 Panicum virgatum Pavir.Da01931 I 0.000
Pavir.J00256 Panicum virgatum Pavir.J00256 I 0.000
OMERI02G32150 Oryza meridionalis OMERI02G32150 I 0.000
BGIOSGA028831 Oryza indica BGIOSGA028831 I 0.000
GRMZM2G033413 Zea mays GRMZM2G033413 I 0.000
LPERR08G14740 Leersia perrieri LPERR08G14740 I 0.000
OB02G40680 Oryza brachyantha OB02G40680 I 0.000
OB08G24950 Oryza brachyantha OB08G24950 I 0.000
OBART02G33770 Oryza barthii OBART02G33770 I 0.000
OGLUM02G34210 Oryza glumaepatula OGLUM02G34210 I 0.000
OLONG_001053 Oryza longistaminata OLONG_001053 I 0.000
BZIP23 Oryza sativa OS02G0766700 I 0.000
ONIVA02G33490 Oryza nivara ONIVA02G33490 I 0.000
OPUNC08G15700 Oryza punctata OPUNC08G15700 I 0.000
ORGLA02G0292000 Oryza glaberrima ORGLA02G0292000 I 0.000
ORGLA08G0211300 Oryza glaberrima ORGLA08G0211300 I 0.000
ORUFI02G35260 Oryza rufipogon ORUFI02G35260 I 0.000
ORUFI08G19970 Oryza rufipogon ORUFI08G19970 I 0.000
ORUFI12G20810 Oryza rufipogon ORUFI12G20810 I 0.000
TRIUR3_27679 Triticum urartu TRIUR3_27679 N 0.000
Traes_6DL_F7015CE89 Triticum aestivum Traes_6DL_F7015CE89 N 0.000
Traes_6AL_E8CD2C02B Triticum aestivum Traes_6AL_E8CD2C02B N 0.000
MLOC_53580 Hordeum vulgare MLOC_53580 N 0.000
BRADI3G57960 Brachypodium distachyon BRADI3G57960 N 0.000