Carubv10008551m.g (Capsella rubella)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Carubv10008551m.g T286282_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LHY
M06997_2.00 		Arabidopsis thaliana
NWAAATATCT
AGATATTTWN		 Dap-seq
OMalley et al.(2016)
LHY1_col_a 		0.909 1.000
LHY
M06998_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
LHY1_colamp_a 		0.909 1.000
OS08G0157600
M02330_2.00 		Oryza sativa
DNRTATCHN
NDGATAYNH		 PBM
Weirauch et al.(2014)
pTH7793 		0.881 0.913
CCA1
M00875_2.00 		Arabidopsis thaliana
NDNRWATCN
NGATWYNHN		 PBM
Franco-Zorrilla et al.(2014)
CCA1 		0.836 0.870
CCA1
M11039_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CCA1_Q5 		0.836 0.870
RVE7
M01069_2.00 		Arabidopsis thaliana
NDHRWATCNN
NNGATWYDHN		 PBM
Sullivan et al.(2014)
pTH7081 		0.800 0.783
RVE7
M02286_2.00 		Arabidopsis thaliana
NDARTATCH
DGATAYTHN		 PBM
Weirauch et al.(2014)
pTH7277 		0.800 0.783
RVE7L
M07071_2.00 		Arabidopsis thaliana
NNNNWAAATATCWNN
NNWGATATTTWNNNN		 Dap-seq
OMalley et al.(2016)
AT3G10113_col_a 		0.800 0.783
RVE7
M07008_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
EPR1_colamp_a 		0.800 0.783
RVE7
M07009_2.00 		Arabidopsis thaliana
NWAAATATCTHN
NDAGATATTTWN		 Dap-seq
OMalley et al.(2016)
EPR1_col 		0.800 0.783
RVE1
M00879_2.00 		Arabidopsis thaliana
AAATATCT
AGATATTT		 PBM
Franco-Zorrilla et al.(2014)
RVE1 		0.767 0.804
RVE1
M07128_2.00 		Arabidopsis thaliana
NNNWAAATATCTNN
NNAGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
RVE1_col_a 		0.767 0.804
RVE1
M07129_2.00 		Arabidopsis thaliana
NNWAATATCW
WGATATTWNN		 Dap-seq
OMalley et al.(2016)
RVE1_colamp_a 		0.767 0.804
PK08316.1
M02350_2.00 		Cannabis sativa
NNNRWATCNN
NNGATWYNNN		 PBM
Weirauch et al.(2014)
pTH9488 		0.766 0.783
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10008551m Myb 24 69

Links

Other Myb/SANT family TFs
Other Capsella rubella TFs

299 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Blimp-1 Drosophila melanogaster FBgn0035625 D
AMEM000073 Anopheles merus AMEM000073 I
D918_01175 Trichuris suis D918_01175 I
D917_07972 Trichinella nativa D917_07972 I
BXY_0993100 Bursaphelenchus xylophilus BXY_0993100 I
BTMF_0000836601 Brugia timori BTMF_0000836601 I
ASU_05469 Ascaris suum ASU_05469 I
PPAI008567 Phlebotomus papatasi PPAI008567 I
MDOA000384 Musca domestica MDOA000384 I
ASIS005657 Anopheles sinensis ASIS005657 I
DME_0000608401 Dracunculus medinensis DME_0000608401 I
AMEC005588 Anopheles melas AMEC005588 I
AFUN002606 Anopheles funestus AFUN002606 I
AFAF006673 Anopheles farauti AFAF006673 I
ACUA020082 Anopheles culicifacies ACUA020082 I
ACOM039487 Anopheles coluzzii ACOM039487 I
AATE010559 Anopheles atroparvus AATE010559 I
LDEC016433 Leptinotarsa decemlineata LDEC016433 I
LCUP008191 Lucilia cuprina LCUP008191 I
HHAL002221-PA Halyomorpha halys HHAL002221-PA I
nOo.2.0.1.g07043 Onchocerca ochengi nOo.2.0.1.g07043 I
TTRE_0000156401 Trichuris trichiura TTRE_0000156401 I
TMUE_s0064002300 Trichuris muris TMUE_s0064002300 I
TCNE_0001220201 Toxocara canis TCNE_0001220201 I
TCLT_0000472801 Thelazia callipaeda TCLT_0000472801 I
SVE_1713000 Strongyloides venezuelensis SVE_1713000 I
SSTP_0000757300 Strongyloides stercoralis SSTP_0000757300 I
SPAL_0000884500 Strongyloides papillosus SPAL_0000884500 I
SMUV_0001104401 Syphacia muris SMUV_0001104401 I
Cflo_04377--XP_391847.3_APIME Camponotus floridanus Cflo_04377--XP_391847.3_APIME I
nLs.2.1.2.g09168 Litomosoides sigmodontis nLs.2.1.2.g09168 I
nDi.2.2.2.g10740 Dirofilaria immitis nDi.2.2.2.g10740 I
L898_g18820 Steinernema monticolum L898_g18820 I
L893_g23908 Steinernema glaseri L893_g23908 I
L892_g2443 Steinernema scapterisci L892_g2443 I
L889_g7623 Steinernema feltiae L889_g7623 I
L596_g21750 Steinernema carpocapsae L596_g21750 I
EVEC_0000549701 Enterobius vermicularis EVEC_0000549701 I
Bm3574 Brugia malayi Bm3574 I
GM14713 Drosophila sechellia FBgn0169634 I
GH16462 Drosophila grimshawi FBgn0123933 I
GG15278 Drosophila erecta FBgn0107530 I
GF23985 Drosophila ananassae FBgn0100979 I
EFV52614 Trichinella spiralis EFV52614 I
DAPPUDRAFT_319330 Daphnia pulex DAPPUDRAFT_319330 I
CPIJ007425 Culex quinquefasciatus CPIJ007425 I
CGI_10024223 Crassostrea gigas CGI_10024223 I
CapteG226252 Capitella teleta CapteG226252 I
GJ13412 Drosophila virilis FBgn0200637 I
BGIBMGA000319 Bombyx mori BGIBMGA000319 I
AGAP006592 Anopheles gambiae AGAP006592 I
ADAC005262 Anopheles darlingi ADAC005262 I
ACYPI000849 Acyrthosiphon pisum ACYPI000849 I
ACEP26221 Atta cephalotes ACEP26221 I
AAEL013770 Aedes aegypti AAEL013770 I
AAEL004255 Aedes aegypti AAEL004255 I
WUBG_04696 Wuchereria bancrofti WUBG_04696 I
MCINX009345 Melitaea cinxia MCINX009345 I
CpipJ_CPIJ007425 Culex pipiens CpipJ_CPIJ007425 I
WBGene00238199 Onchocerca volvulus WBGene00238199 I
TC014741 Tribolium castaneum TC014741 I
SMAR011793 Strigamia maritima SMAR011793 I
SINV14078 Solenopsis invicta SINV14078 I
RPRC001983 Rhodnius prolixus RPRC001983 I
PHUM607020 Pediculus humanus PHUM607020 I
NV12817 Nasonia vitripennis NV12817 I
CLEC009125 Cimex lectularius CLEC009125 I
LotgiG86198 Lottia gigantea LotgiG86198 I
LOAG_11444 Loa loa LOAG_11444 I
L798_14234 Zootermopsis nevadensis L798_14234 I
KGM_16647 Danaus plexippus KGM_16647 I
HMEL007072 Heliconius melpomene HMEL007072 I
GB51060 Apis mellifera GB51060 I
GA23469 Drosophila pseudoobscura FBgn0244871 I
GK17303 Drosophila willistoni FBgn0219302 I