Ciclev10005329m.g (Citrus clementina)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Ciclev10005329m.g T286501_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ASR3
M07053_2.00 		Arabidopsis thaliana
DNNNNHHWNDRCCCTWAW
WTWAGGGYHNWDDNNNNH		 Dap-seq
OMalley et al.(2016)
AT2G33550_col_a 		0.909 1.000
ASR3
M07054_2.00 		Arabidopsis thaliana
NHWDDTRCCCTWMW
WKWAGGGYAHHWDN		 Dap-seq
OMalley et al.(2016)
AT2G33550_colamp_a 		0.909 1.000
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10005329m Myb 46 113

Links

Other Myb/SANT family TFs
Other Citrus clementina TFs

38 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ASR3 Arabidopsis thaliana AT2G33550 D 0.909
cassava40545.m1 Manihot esculenta cassava40545.m1 I 0.799
chr1.LjT14I13.140.nd Lotus japonicus chr1.LjT14I13.140.nd I 0.758
Cucsa.349220 Cucumis sativus Cucsa.349220 I 0.820
mgf009760m Mimulus guttatus mgf009760m I 0.909
Aquca_043_00021 Aquilegia coerulea Aquca_043_00021 I 0.889
Bostr.23794s0746 Boechera stricta Bostr.23794s0746 I 0.870
Carubv10023675m.g Capsella rubella Carubv10023675m.g I 0.870
Ciclev10033491m.g Citrus clementina Ciclev10033491m.g I 0.703
Eucgr.B03553 Eucalyptus grandis Eucgr.B03553 I 0.820
evm.TU.supercontig_2461.1 Carica papaya evm.TU.supercontig_2461.1 I 0.909
Gorai.002G021600 Gossypium raimondii Gorai.002G021600 I 0.909
MDP0000232058 Malus domestica MDP0000232058 I 0.749
orange1.1g019057m.g Citrus sinensis orange1.1g019057m.g I 0.909
orange1.1g038571m.g Citrus sinensis orange1.1g038571m.g I 0.712
SapurV1A.0499s0110 Salix purpurea SapurV1A.0499s0110 I 0.901
SapurV1A.2674s0010 Salix purpurea SapurV1A.2674s0010 I 0.909
Thhalv10016974m.g Eutrema salsugineum Thhalv10016974m.g I 0.870
PK25885.1 Cannabis sativa PK25885.1 I 0.765
AMTR_s00025p00072580 Amborella trichopoda AMTR_s00025p00072580 I 0.740
scaffold_401930.1 Arabidopsis lyrata scaffold_401930.1 I 0.870
Bo4g043600 Brassica oleracea Bo4g043600 I 0.870
Bo4g182020 Brassica oleracea Bo4g182020 I 0.870
Bra005486 Brassica rapa Bra005486 I 0.870
Bra021860 Brassica rapa Bra021860 I 0.870
GLYMA08G28880 Glycine max GLYMA08G28880 I 0.758
GLYMA18G51790 Glycine max GLYMA18G51790 I 0.758
POPTR_0001s13060 Populus trichocarpa POPTR_0001s13060 I 0.909
POPTR_0003s16150 Populus trichocarpa POPTR_0003s16150 I 0.901
cassava13649.valid.m1 Manihot esculenta cassava13649.valid.m1 I 0.909
Si017674m.g Setaria italica Si017674m.g I 0.691
Solyc04g045430.2 Solanum lycopersicum Solyc04g045430.2 I 0.909
VIT_01s0150g00050 Vitis vinifera VIT_01s0150g00050 I 0.820
VIT_17s0000g00270 Vitis vinifera VIT_17s0000g00270 I 0.736
Cla001502 Citrullus lanatus Cla001502 I 0.780
Pm024597 Prunus mume Pm024597 I 0.807
30128.m008552 Ricinus communis 30128.m008552 I 0.909
cassava12909.valid.m1 Manihot esculenta cassava12909.valid.m1 I 0.909