CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

gene28293-v1.0-hybrid *(Fragaria vesca)* Myb/SANT
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00249 (Myb_DNA-binding)	IPR014778	gene28293-v1.0-hybrid	T287399_2.00	JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
ATMYB121 M07091_2.00	Arabidopsis thaliana	NYNWACCTAMYHHH	DDDRKTAGGTWNRN	Dap-seq OMalley et al.(2016) MYB121_col_a	0.757	0.796
MYB62 M07027_2.00	Arabidopsis thaliana	NHRCCTAAYTWNHNN	NNDNWARTTAGGYDN	Dap-seq OMalley et al.(2016) MYB62_col_a	0.697	0.699
MYB62 M07028_2.00	Arabidopsis thaliana	HNKRCCTAACTHH	DDAGTTAGGYMND	Dap-seq OMalley et al.(2016) MYB62_colamp_a	0.697	0.699
MYB108 M07065_2.00	Arabidopsis thaliana	RCCWAAYYNNNNHNH	DNDNNNNRRTTWGGY	Dap-seq OMalley et al.(2016) BOS1_col_a	0.679	0.688
MYB116 M07014_2.00	Arabidopsis thaliana	NRCCTAAYTWNWNNN	NNNWNWARTTAGGYN	Dap-seq OMalley et al.(2016) MYB116_col_a	0.678	0.667
MYB116 M07015_2.00	Arabidopsis thaliana	HNTRCCTAACTHH	DDAGTTAGGYAND	Dap-seq OMalley et al.(2016) MYB116_colamp_a	0.678	0.667
MYB59 M00883_2.00	Arabidopsis thaliana	NKACCTAAYN	NRTTAGGTMN	PBM Franco-Zorrilla et al.(2014) MYB59	0.673	0.699
MYB27 M07097_2.00	Arabidopsis thaliana	HHTACCTAAYTTWWN	NWWAARTTAGGTADD	Dap-seq OMalley et al.(2016) MYB27_col_a	0.666	0.667
MYB27 M07098_2.00	Arabidopsis thaliana	NYHTACCTAAYTTWHN	NDWAARTTAGGTADRN	Dap-seq OMalley et al.(2016) MYB27_colamp_a	0.666	0.667
For this family, TFs with SR scores > 0.661* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
mrna28293.1-v1.0-hybrid	Myb	17	64	KGPWTSEEDRLLIEYVRLHGEGRWNSVARLAGLKRNGKSCRLRWVNYL
mrna28293.1-v1.0-hybrid	Myb	70	115	RGQITPHEESIILQLHARWGNRWSTIARSLPGRTDNEIKNYWRTHF

Links
Other Myb/SANT family TFs
Other *Fragaria vesca* TFs

593 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
ENSCING00000022310	Ciona intestinalis	ENSCING00000022310	I	0.000
ENSCSAVG00000004962	Ciona savignyi	ENSCSAVG00000004962	I	0.000
PPA02291	Pristionchus pacificus	PPA02291	N	0.000
PPA12540	Pristionchus pacificus	PPA12540	N	0.000
PPA29004	Pristionchus pacificus	PPA29004	N	0.000
PPA29203	Pristionchus pacificus	PPA29203	N	0.000
PPA29253	Pristionchus pacificus	PPA29253	N	0.000
PPA29254	Pristionchus pacificus	PPA29254	N	0.000
scaffold202-EXSNAP2012.8	Pristionchus exspectatus	scaffold202-EXSNAP2012.8	N	0.000
scaffold2087-EXSNAP2012.2	Pristionchus exspectatus	scaffold2087-EXSNAP2012.2	N	0.000
scaffold83-EXSNAP2012.33	Pristionchus exspectatus	scaffold83-EXSNAP2012.33	N	0.000
scaffold83-EXSNAP2012.34	Pristionchus exspectatus	scaffold83-EXSNAP2012.34	N	0.000
scaffold86-EXSNAP2012.29	Pristionchus exspectatus	scaffold86-EXSNAP2012.29	N	0.000