Gorai.010G023500 (Gossypium raimondii)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Gorai.010G023500 T287736_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AtMYB70
M01071_2.00 		Arabidopsis thaliana
HAACBRHHN
NDDYVGTTD		 PBM
Sullivan et al.(2014)
pTH8588 		0.806 0.892
PK28565.1
M02357_2.00 		Cannabis sativa
TAACBGTY
RACVGTTA		 PBM
Weirauch et al.(2014)
pTH9653 		0.806 0.892
AtMYB70
M07048_2.00 		Arabidopsis thaliana
YAACBGWHWWAAMN
NKTTWWDWCVGTTR		 Dap-seq
OMalley et al.(2016)
MYB70_col_a 		0.806 0.892
MYB73
M07114_2.00 		Arabidopsis thaliana
TAACBGWHWHW
WDWDWCVGTTA		 Dap-seq
OMalley et al.(2016)
MYB73_col_a 		0.792 0.882
MYB44
M01082_2.00 		Arabidopsis thaliana
HAACBRHHN
NDDYVGTTD		 PBM
Sullivan et al.(2014)
pTH7078 		0.782 0.871
MYB44
M07155_2.00 		Arabidopsis thaliana
HDTAACBGWHW
WDWCVGTTAHD		 Dap-seq
OMalley et al.(2016)
MYB44_colamp_a 		0.782 0.871
MYB44
M07156_2.00 		Arabidopsis thaliana
HAACBRWHWWAACBGHHWH
DWDDCVGTTWWDWYVGTTD		 Dap-seq
OMalley et al.(2016)
MYB44_col 		0.782 0.871
F3A4.140
M02299_2.00 		Arabidopsis thaliana
YAACBGYY
RRCVGTTR		 PBM
Weirauch et al.(2014)
pTH7112 		0.743 0.828
F3A4.140
M07095_2.00 		Arabidopsis thaliana
TAACBGYHWHNNHNN
NNDNNDWDRCVGTTA		 Dap-seq
OMalley et al.(2016)
MYB77_col_a 		0.743 0.828
F3A4.140
M07096_2.00 		Arabidopsis thaliana
AACCGYAACCSTAWHWWAMV
BKTWWDWTASGGTTRCGGTT		 Dap-seq
OMalley et al.(2016)
MYB77_colamp_a 		0.743 0.828
F3A4.140
M02701_2.00 		Arabidopsis thaliana
SYAACYGYCVHBN
NVDBGRCRGTTRS		 SELEX
Mathelier et al.(2014)
MA0575.1 		0.743 0.828
F3A4.140
M11044_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATMYB77_01 		0.743 0.828
OS02G0187700
M02327_2.00 		Oryza sativa
NTAMCKGTHN
NDACMGKTAN		 PBM
Weirauch et al.(2014)
pTH8645 		0.708 0.785
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.010G023500.1 Myb 12 58
Gorai.010G023500.1 Myb 64 109

Links

Other Myb/SANT family TFs
Other Gossypium raimondii TFs

316 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
EIN3 Arabidopsis thaliana AT3G20770 D 0.000
e_gw1.87.73.1 Physcomitrella patens e_gw1.87.73.1 D 0.000
Aquca_014_00938 Aquilegia coerulea Aquca_014_00938 I 0.000
PRUPE_ppa003550mg Prunus persica PRUPE_ppa003550mg I 0.000
mgf018950m Mimulus guttatus mgf018950m I 0.000
mgf012394m Mimulus guttatus mgf012394m I 0.000
Cucsa.364340 Cucumis sativus Cucsa.364340 I 0.000
cassava3620.m1 Manihot esculenta cassava3620.m1 I 0.000
29708.m000185 Ricinus communis 29708.m000185 I 0.000
Pm017011 Prunus mume Pm017011 I 0.000
Pm017009 Prunus mume Pm017009 I 0.000
Cla013874 Citrullus lanatus Cla013874 I 0.000
Cla011250 Citrullus lanatus Cla011250 I 0.000
Ca_10236 Cicer arietinum Ca_10236 I 0.000
Ca_02669 Cicer arietinum Ca_02669 I 0.000
VIT_06s0009g01380 Vitis vinifera VIT_06s0009g01380 I 0.000
Traes_4DL_C083C804E Triticum aestivum Traes_4DL_C083C804E I 0.000
Solyc06g073730.1 Solanum lycopersicum Solyc06g073730.1 I 0.000
Solyc06g073720.1 Solanum lycopersicum Solyc06g073720.1 I 0.000
Solyc01g014480.2 Solanum lycopersicum Solyc01g014480.2 I 0.000
Si034616m.g Setaria italica Si034616m.g I 0.000
Sb02g043350 Sorghum bicolor Sb02g043350 I 0.000
Sb01g036740 Sorghum bicolor Sb01g036740 I 0.000
chr3.LjB09K03.50.nc Lotus japonicus chr3.LjB09K03.50.nc I 0.000
MDP0000306498 Malus domestica MDP0000306498 I 0.000
AMTR_s00119p00117410 Amborella trichopoda AMTR_s00119p00117410 I 0.000
chr2.CM0031.190.nc Lotus japonicus chr2.CM0031.190.nc I 0.000
PK19114.1 Cannabis sativa PK19114.1 I 0.000
PK13351.1 Cannabis sativa PK13351.1 I 0.000
PK01239.1 Cannabis sativa PK01239.1 I 0.000
Thhalv10001938m.g Eutrema salsugineum Thhalv10001938m.g I 0.000
SapurV1A.0561s0140 Salix purpurea SapurV1A.0561s0140 I 0.000
SapurV1A.0070s0670 Salix purpurea SapurV1A.0070s0670 I 0.000
Pavir.Ib01512 Panicum virgatum Pavir.Ib01512 I 0.000
orange1.1g009144m.g Citrus sinensis orange1.1g009144m.g I 0.000
orange1.1g007017m.g Citrus sinensis orange1.1g007017m.g I 0.000
Bostr.29505s0037 Boechera stricta Bostr.29505s0037 I 0.000
Gorai.013G266300 Gossypium raimondii Gorai.013G266300 I 0.000
Gorai.009G105400 Gossypium raimondii Gorai.009G105400 I 0.000
Gorai.004G227800 Gossypium raimondii Gorai.004G227800 I 0.000
Gorai.003G140600 Gossypium raimondii Gorai.003G140600 I 0.000
gene25474-v1.0-hybrid Fragaria vesca gene25474-v1.0-hybrid I 0.000
evm.TU.supercontig_103.60 Carica papaya evm.TU.supercontig_103.60 I 0.000
Eucgr.G02632 Eucalyptus grandis Eucgr.G02632 I 0.000
Ciclev10014617m.g Citrus clementina Ciclev10014617m.g I 0.000
Carubv10022879m.g Capsella rubella Carubv10022879m.g I 0.000
Cagra.6016s0001 Capsella grandiflora Cagra.6016s0001 I 0.000
GLYMA13G03700 Glycine max GLYMA13G03700 I 0.000
GSMUA_Achr8G21550_001 Musa acuminata GSMUA_Achr8G21550_001 I 0.000
GSMUA_Achr6G15930_001 Musa acuminata GSMUA_Achr6G15930_001 I 0.000
GSMUA_Achr5G27670_001 Musa acuminata GSMUA_Achr5G27670_001 I 0.000
GSMUA_Achr3G09440_001 Musa acuminata GSMUA_Achr3G09440_001 I 0.000
GSMUA_Achr2G11540_001 Musa acuminata GSMUA_Achr2G11540_001 I 0.000
GSMUA_Achr11G25120_001 Musa acuminata GSMUA_Achr11G25120_001 I 0.000
GSMUA_Achr10G12800_001 Musa acuminata GSMUA_Achr10G12800_001 I 0.000
GRMZM2G317584 Zea mays GRMZM2G317584 I 0.000
GRMZM2G003558 Zea mays GRMZM2G003558 I 0.000
GLYMA20G12250 Glycine max GLYMA20G12250 I 0.000
GLYMA14G04550 Glycine max GLYMA14G04550 I 0.000
GSMUA_Achr9G17080_001 Musa acuminata GSMUA_Achr9G17080_001 I 0.000
GLYMA13G03660 Glycine max GLYMA13G03660 I 0.000
GLYMA02G44220 Glycine max GLYMA02G44220 I 0.000
EIL1 Arabidopsis lyrata fgenesh2_kg.4__646__AT2G27050.1 I 0.000
BRADI1G63780 Brachypodium distachyon BRADI1G63780 I 0.000
Bra035746 Brassica rapa Bra035746 I 0.000
Bra023927 Brassica rapa Bra023927 I 0.000
Bo3g076180 Brassica oleracea Bo3g076180 I 0.000
Bo3g041690 Brassica oleracea Bo3g041690 I 0.000
BGIOSGA023694 Oryza indica BGIOSGA023694 I 0.000
BGIOSGA012535 Oryza indica BGIOSGA012535 I 0.000
OPUNC07G25150 Oryza punctata OPUNC07G25150 I 0.000
POPTR_0008s01200 Populus trichocarpa POPTR_0008s01200 I 0.000
PGSC0003DMG400027507 Solanum tuberosum PGSC0003DMG400027507 I 0.000
PGSC0003DMG400008712 Solanum tuberosum PGSC0003DMG400008712 I 0.000
PGSC0003DMG400005915 Solanum tuberosum PGSC0003DMG400005915 I 0.000
PGSC0003DMG400005914 Solanum tuberosum PGSC0003DMG400005914 I 0.000
OS07G0685700 Oryza sativa OS07G0685700 I 0.000
ORUFI07G27710 Oryza rufipogon ORUFI07G27710 I 0.000
ORUFI03G16290 Oryza rufipogon ORUFI03G16290 I 0.000
ORGLA07G0211700 Oryza glaberrima ORGLA07G0211700 I 0.000
ORGLA03G0150600 Oryza glaberrima ORGLA03G0150600 I 0.000
POPTR_0010s25370 Populus trichocarpa POPTR_0010s25370 I 0.000
OPUNC03G15240 Oryza punctata OPUNC03G15240 I 0.000
ONIVA07G26490 Oryza nivara ONIVA07G26490 I 0.000
ONIVA03G16680 Oryza nivara ONIVA03G16680 I 0.000
OMERI03G14140 Oryza meridionalis OMERI03G14140 I 0.000
OLONG_004360 Oryza longistaminata OLONG_004360 I 0.000
OGLUM03G15860 Oryza glumaepatula OGLUM03G15860 I 0.000
MTR_5g087790 Medicago truncatula MTR_5g087790 I 0.000
MTR_3g078770 Medicago truncatula MTR_3g078770 I 0.000
LPERR07G23570 Leersia perrieri LPERR07G23570 I 0.000
LPERR03G13760 Leersia perrieri LPERR03G13760 I 0.000