Gorai.012G135600 (Gossypium raimondii)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Gorai.012G135600 T287794_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SRM1
M02307_2.00 		Arabidopsis thaliana
NNHNATCNN
NNGATNDNN		 PBM
Weirauch et al.(2014)
pTH7080 		0.726 0.846
SRM1
M07121_2.00 		Arabidopsis thaliana
YCTTATCYWHW
WDWRGATAAGR		 Dap-seq
OMalley et al.(2016)
At5g08520_colamp_a 		0.726 0.846
SRM1
M07122_2.00 		Arabidopsis thaliana
YCTTATCYWHWWH
DWWDWRGATAAGR		 Dap-seq
OMalley et al.(2016)
At5g08520_col_b 		0.726 0.846
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.012G135600.1 Myb 119 164
Gorai.012G135600.2 Myb 119 164
Gorai.012G135600.3 Myb 119 164
Gorai.012G135600.4 Myb 119 164
Gorai.012G135600.5 Myb 119 164
Gorai.012G135600.6 Myb 119 164
Gorai.012G135600.7 Myb 119 164
Gorai.012G135600.8 Myb 119 164
Gorai.012G135600.9 Myb 119 164

Links

Other Myb/SANT family TFs
Other Gossypium raimondii TFs

71 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SRM1 Arabidopsis thaliana AT5G08520 D 0.726
Ciclev10016071m.g Citrus clementina Ciclev10016071m.g I 0.665
Cla009230 Citrullus lanatus Cla009230 I 0.819
Carubv10001525m.g Capsella rubella Carubv10001525m.g I 0.756
Cagra.1365s0066 Capsella grandiflora Cagra.1365s0066 I 0.756
Bostr.13129s0103 Boechera stricta Bostr.13129s0103 I 0.714
Bostr.10199s0068 Boechera stricta Bostr.10199s0068 I 0.690
Aquca_035_00057 Aquilegia coerulea Aquca_035_00057 I 0.814
mgf009460m Mimulus guttatus mgf009460m I 0.724
Cucsa.280970 Cucumis sativus Cucsa.280970 I 0.792
Cucsa.013870 Cucumis sativus Cucsa.013870 I 0.819
cassava18614.valid.m1 Manihot esculenta cassava18614.valid.m1 I 0.844
30131.m007263 Ricinus communis 30131.m007263 I 0.810
Pm017050 Prunus mume Pm017050 I 0.706
Pm006046 Prunus mume Pm006046 I 0.766
Cla020348 Citrullus lanatus Cla020348 I 0.803
PK13672.1 Cannabis sativa PK13672.1 I 0.757
Ciclev10032259m.g Citrus clementina Ciclev10032259m.g I 0.845
Eucgr.G02591 Eucalyptus grandis Eucgr.G02591 I 0.793
evm.TU.supercontig_138.5 Carica papaya evm.TU.supercontig_138.5 I 0.828
gene23544-v1.0-hybrid Fragaria vesca gene23544-v1.0-hybrid I 0.706
Gorai.005G212900 Gossypium raimondii Gorai.005G212900 I 0.854
Gorai.006G063000 Gossypium raimondii Gorai.006G063000 I 0.678
Gorai.008G147400 Gossypium raimondii Gorai.008G147400 I 0.844
Gorai.013G067600 Gossypium raimondii Gorai.013G067600 I 0.845
Lus10013447.g Linum usitatissimum Lus10013447.g I 0.771
MDP0000289018 Malus domestica MDP0000289018 I 0.680
orange1.1g022439m.g Citrus sinensis orange1.1g022439m.g I 0.845
SapurV1A.0234s0050 Salix purpurea SapurV1A.0234s0050 I 0.823
SapurV1A.0333s0040 Salix purpurea SapurV1A.0333s0040 I 0.757
Thhalv10014203m.g Eutrema salsugineum Thhalv10014203m.g I 0.726
Bra028654 Brassica rapa Bra028654 I 0.684
GLYMA07G28310 Glycine max GLYMA07G28310 I 0.805
GLYMA08G40020 Glycine max GLYMA08G40020 I 0.816
GLYMA10G42450 Glycine max GLYMA10G42450 I 0.682
GLYMA18G18140 Glycine max GLYMA18G18140 I 0.816
GLYMA20G01450 Glycine max GLYMA20G01450 I 0.810
GLYMA20G24600 Glycine max GLYMA20G24600 I 0.682
fgenesh2_kg.6__825__AT5G08520.1 Arabidopsis lyrata fgenesh2_kg.6__825__AT5G08520.1 I 0.720
GRMZM2G149958 Zea mays GRMZM2G149958 I 0.675
GSMUA_Achr1G17730_001 Musa acuminata GSMUA_Achr1G17730_001 I 0.780
GSMUA_Achr9G20620_001 Musa acuminata GSMUA_Achr9G20620_001 I 0.783
GSMUA_Achr9G23760_001 Musa acuminata GSMUA_Achr9G23760_001 I 0.752
MTR_1g111830 Medicago truncatula MTR_1g111830 I 0.682
PGSC0003DMG400025303 Solanum tuberosum PGSC0003DMG400025303 I 0.750
PRUPE_ppa009396mg Prunus persica PRUPE_ppa009396mg I 0.804
Bo9g174380 Brassica oleracea Bo9g174380 I 0.678
PRUPE_ppa010926mg Prunus persica PRUPE_ppa010926mg I 0.706
Bo3g004970 Brassica oleracea Bo3g004970 I 0.695
Bo2g009130 Brassica oleracea Bo2g009130 I 0.695
Ca_19000 Cicer arietinum Ca_19000 I 0.742
TCM_007672 Theobroma cacao TCM_007672 I 0.844
TCM_041160 Theobroma cacao TCM_041160 I 0.680
VIT_10s0071g00660 Vitis vinifera VIT_10s0071g00660 I 0.812
Ca_05454 Cicer arietinum Ca_05454 I 0.672
Pavir.Ga00233 Panicum virgatum Pavir.Ga00233 N 0.700
AMTR_s00106p00065610 Amborella trichopoda AMTR_s00106p00065610 N 0.700
Pavir.Gb00055 Panicum virgatum Pavir.Gb00055 N 0.710
BRADI5G26110 Brachypodium distachyon BRADI5G26110 N 0.686
Lus10041001.g Linum usitatissimum Lus10041001.g N 0.766
gene00786-v1.0-hybrid Fragaria vesca gene00786-v1.0-hybrid N 0.691
Eucgr.J00349 Eucalyptus grandis Eucgr.J00349 N 0.733
GSMUA_Achr10G06880_001 Musa acuminata GSMUA_Achr10G06880_001 N 0.734
MTR_8g063600 Medicago truncatula MTR_8g063600 N 0.663
OB04G36550 Oryza brachyantha OB04G36550 N 0.670
gw1.13.182.1 Physcomitrella patens gw1.13.182.1 N 0.692
e_gw1.256.18.1 Physcomitrella patens e_gw1.256.18.1 N 0.696
Sb06g032880 Sorghum bicolor Sb06g032880 N 0.675
Si022762m.g Setaria italica Si022762m.g N 0.705
Solyc04g008870.2 Solanum lycopersicum Solyc04g008870.2 N 0.715