Pavir.Da00077 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.Da00077 T289077_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Gam1
M02703_2.00 		Hordeum vulgare
NVYAACSGMC
GKCSGTTRBN		 SELEX
Mathelier et al.(2014)
MA0034.1 		0.680 0.753
Gam1
M11061_2.00 		Hordeum vulgare
YAACSRHM
KDYSGTTR		 Transfac
Matys et al.(2006)
P$GAMYB_01 		0.680 0.753
GAM1_ORYSI
M11055_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GAMYB_Q2 		0.663 0.742
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Da00077.1.p Myb 16 63
Pavir.Da00077.1.p Myb 69 114

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

141 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
STOP1 Arabidopsis thaliana AT1G34370 D 0.000
Pm022201 Prunus mume Pm022201 I 0.000
PDK_20s1338731g001 Phoenix dactylifera PDK_20s1338731g001 I 0.000
cassava24483.valid.m1 Manihot esculenta cassava24483.valid.m1 I 0.000
Cucsa.079940 Cucumis sativus Cucsa.079940 I 0.000
mgf000060m Mimulus guttatus mgf000060m I 0.000
Aquca_017_00778 Aquilegia coerulea Aquca_017_00778 I 0.000
Bostr.1040s0032 Boechera stricta Bostr.1040s0032 I 0.000
Cagra.12398s0002 Capsella grandiflora Cagra.12398s0002 I 0.000
Carubv10008876m.g Capsella rubella Carubv10008876m.g I 0.000
Eucgr.F02627 Eucalyptus grandis Eucgr.F02627 I 0.000
gene27486-v1.0-hybrid Fragaria vesca gene27486-v1.0-hybrid I 0.000
MDP0000141403 Malus domestica MDP0000141403 I 0.000
MDP0000199559 Malus domestica MDP0000199559 I 0.000
MDP0000551046 Malus domestica MDP0000551046 I 0.000
MDP0000807856 Malus domestica MDP0000807856 I 0.000
Pavir.Ia00191 Panicum virgatum Pavir.Ia00191 I 0.000
Pavir.J01834 Panicum virgatum Pavir.J01834 I 0.000
Pavir.J06328 Panicum virgatum Pavir.J06328 I 0.000
Pavir.J12018 Panicum virgatum Pavir.J12018 I 0.000
SapurV1A.0287s0150 Salix purpurea SapurV1A.0287s0150 I 0.000
SapurV1A.2334s0030 Salix purpurea SapurV1A.2334s0030 I 0.000
Thhalv10007411m.g Eutrema salsugineum Thhalv10007411m.g I 0.000
PK23301.1 Cannabis sativa PK23301.1 I 0.000
AMTR_s00017p00086440 Amborella trichopoda AMTR_s00017p00086440 I 0.000
Sb01g001950 Sorghum bicolor Sb01g001950 I 0.000
Bo8g027000 Brassica oleracea Bo8g027000 I 0.000
STOP1 Arabidopsis lyrata fgenesh2_kg.1__3547__AT1G34370.2 I 0.000
GLYMA10G35940 Glycine max GLYMA10G35940 I 0.000
GLYMA16G27280 Glycine max GLYMA16G27280 I 0.000
GLYMA20G31650 Glycine max GLYMA20G31650 I 0.000
GSMUA_Achr5G01170_001 Musa acuminata GSMUA_Achr5G01170_001 I 0.000
LPERR03G34390 Leersia perrieri LPERR03G34390 I 0.000
OB03G47410 Oryza brachyantha OB03G47410 I 0.000
PGSC0003DMG400009234 Solanum tuberosum PGSC0003DMG400009234 I 0.000
POPTR_0019s11520 Populus trichocarpa POPTR_0019s11520 I 0.000
PRUPE_ppa004510mg Prunus persica PRUPE_ppa004510mg I 0.000
Cla016623 Citrullus lanatus Cla016623 I 0.000
SELMODRAFT_48272 Selaginella moellendorffii SELMODRAFT_48272 I 0.000
SELMODRAFT_58361 Selaginella moellendorffii SELMODRAFT_58361 I 0.000
SELMODRAFT_68340 Selaginella moellendorffii SELMODRAFT_68340 I 0.000
Si036555m.g Setaria italica Si036555m.g I 0.000
Solyc11g017140.1 Solanum lycopersicum Solyc11g017140.1 I 0.000
TCM_036719 Theobroma cacao TCM_036719 I 0.000
STOP1 Vitis vinifera VIT_18s0072g00840 I 0.000
Ca_04300 Cicer arietinum Ca_04300 I 0.000
SELMODRAFT_48276 Selaginella moellendorffii SELMODRAFT_48276 N 0.000
SELMODRAFT_58353 Selaginella moellendorffii SELMODRAFT_58353 N 0.000