chr2.CM0250.240.nd (Lotus japonicus)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 chr2.CM0250.240.nd T290682_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK28565.1
M02357_2.00 		Cannabis sativa
TAACBGTY
RACVGTTA		 PBM
Weirauch et al.(2014)
pTH9653 		0.856 0.957
AtMYB70
M01071_2.00 		Arabidopsis thaliana
HAACBRHHN
NDDYVGTTD		 PBM
Sullivan et al.(2014)
pTH8588 		0.840 0.925
AtMYB70
M07048_2.00 		Arabidopsis thaliana
YAACBGWHWWAAMN
NKTTWWDWCVGTTR		 Dap-seq
OMalley et al.(2016)
MYB70_col_a 		0.840 0.925
MYB73
M07114_2.00 		Arabidopsis thaliana
TAACBGWHWHW
WDWDWCVGTTA		 Dap-seq
OMalley et al.(2016)
MYB73_col_a 		0.825 0.914
MYB44
M01082_2.00 		Arabidopsis thaliana
HAACBRHHN
NDDYVGTTD		 PBM
Sullivan et al.(2014)
pTH7078 		0.787 0.860
MYB44
M07155_2.00 		Arabidopsis thaliana
HDTAACBGWHW
WDWCVGTTAHD		 Dap-seq
OMalley et al.(2016)
MYB44_colamp_a 		0.787 0.860
MYB44
M07156_2.00 		Arabidopsis thaliana
HAACBRWHWWAACBGHHWH
DWDDCVGTTWWDWYVGTTD		 Dap-seq
OMalley et al.(2016)
MYB44_col 		0.787 0.860
F3A4.140
M02299_2.00 		Arabidopsis thaliana
YAACBGYY
RRCVGTTR		 PBM
Weirauch et al.(2014)
pTH7112 		0.728 0.828
F3A4.140
M07095_2.00 		Arabidopsis thaliana
TAACBGYHWHNNHNN
NNDNNDWDRCVGTTA		 Dap-seq
OMalley et al.(2016)
MYB77_col_a 		0.728 0.828
F3A4.140
M07096_2.00 		Arabidopsis thaliana
AACCGYAACCSTAWHWWAMV
BKTWWDWTASGGTTRCGGTT		 Dap-seq
OMalley et al.(2016)
MYB77_colamp_a 		0.728 0.828
F3A4.140
M02701_2.00 		Arabidopsis thaliana
SYAACYGYCVHBN
NVDBGRCRGTTRS		 SELEX
Mathelier et al.(2014)
MA0575.1 		0.728 0.828
F3A4.140
M11044_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATMYB77_01 		0.728 0.828
OS02G0187700
M02327_2.00 		Oryza sativa
NTAMCKGTHN
NDACMGKTAN		 PBM
Weirauch et al.(2014)
pTH8645 		0.703 0.796
PK07741.1
M01277_2.00 		Cannabis sativa
HAMCBRHHN
NDDYVGKTD		 PBM
Lambert et al.(2019)
pTH11469 		0.680 0.774
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
chr2.CM0250.240.nd Myb 18 64
chr2.CM0250.240.nd Myb 70 115

Links

Other Myb/SANT family TFs
Other Lotus japonicus TFs

316 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pm001317 Prunus mume Pm001317 I 0.000
PK07387.1 Cannabis sativa PK07387.1 I 0.000
SapurV1A.0374s0050 Salix purpurea SapurV1A.0374s0050 I 0.000
Lus10041475.g Linum usitatissimum Lus10041475.g I 0.000
Lus10034296.g Linum usitatissimum Lus10034296.g I 0.000
Gorai.006G111800 Gossypium raimondii Gorai.006G111800 I 0.000
gene21797-v1.0-hybrid Fragaria vesca gene21797-v1.0-hybrid I 0.000
evm.TU.supercontig_32.14 Carica papaya evm.TU.supercontig_32.14 I 0.000
Eucgr.J00491 Eucalyptus grandis Eucgr.J00491 I 0.000
mgf001395m Mimulus guttatus mgf001395m I 0.000
cassava13378.valid.m1 Manihot esculenta cassava13378.valid.m1 I 0.000
30055.m001550 Ricinus communis 30055.m001550 I 0.000
AMTR_s00031p00017860 Amborella trichopoda AMTR_s00031p00017860 I 0.000
Cla008794 Citrullus lanatus Cla008794 I 0.000
Ca_07057 Cicer arietinum Ca_07057 I 0.000
TGA9 Vitis vinifera VIT_06s0080g00360 I 0.000
TCM_041421 Theobroma cacao TCM_041421 I 0.000
Sb04g006500 Sorghum bicolor Sb04g006500 I 0.000
PRUPE_ppa004537mg Prunus persica PRUPE_ppa004537mg I 0.000
POPTR_0009s16590 Populus trichocarpa POPTR_0009s16590 I 0.000
MTR_2g086420 Medicago truncatula MTR_2g086420 I 0.000
GSMUA_Achr2G06770_001 Musa acuminata GSMUA_Achr2G06770_001 I 0.000
GLYMA12G09430 Glycine max GLYMA12G09430 I 0.000
GLYMA11G19026 Glycine max GLYMA11G19026 I 0.000
Cucsa.385130 Cucumis sativus Cucsa.385130 N 0.000