Pavir.Fb02407 (Panicum virgatum)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02365 (NAM) IPR003441 Pavir.Fb02407 T298856_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ANAC050
M07200_2.00 		Arabidopsis thaliana
CTTGHNNYNCAAGNA
TNCTTGNRNNDCAAG		 Dap-seq
OMalley et al.(2016)
ANAC050_colamp_a 		0.902 0.763
ANAC050
M07201_2.00 		Arabidopsis thaliana
CTTGNNNHRCAMGBHA
TDVCKTGYDNNNCAAG		 Dap-seq
OMalley et al.(2016)
ANAC050_col_v3a 		0.902 0.763
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Fb02407.1.p NAC/NAM 20 146

Links

Other NAC/NAM family TFs
Other Panicum virgatum TFs

83 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ANAC050 Arabidopsis thaliana AT3G10480 D 0.908
Bostr.22252s0012 Boechera stricta Bostr.22252s0012 I 0.902
Cagra.0834s0028 Capsella grandiflora Cagra.0834s0028 I 0.897
Bostr.22252s0011 Boechera stricta Bostr.22252s0011 I 0.902
mgf000623m Mimulus guttatus mgf000623m I 0.893
Cucsa.308760 Cucumis sativus Cucsa.308760 I 0.879
cassava22912.valid.m1 Manihot esculenta cassava22912.valid.m1 I 0.902
Cla020838 Citrullus lanatus Cla020838 I 0.881
Ca_08371 Cicer arietinum Ca_08371 I 0.888
VIT_13s0019g05240 Vitis vinifera VIT_13s0019g05240 I 0.902
VIT_13s0019g05230 Vitis vinifera VIT_13s0019g05230 I 0.896
TRIUR3_33524 Triticum urartu TRIUR3_33524 I 0.964
Traes_7DS_9FBF54244 Triticum aestivum Traes_7DS_9FBF54244 I 0.964
Traes_7BL_FB5FAC1E8 Triticum aestivum Traes_7BL_FB5FAC1E8 I 0.964
Traes_6AL_8BA1FF8B2 Triticum aestivum Traes_6AL_8BA1FF8B2 I 0.944
TCM_043357 Theobroma cacao TCM_043357 I 0.901
Solyc05g055470.2 Solanum lycopersicum Solyc05g055470.2 I 0.883
Si016620m.g Setaria italica Si016620m.g I 0.938
Si013361m.g Setaria italica Si013361m.g I 0.965
Sb07g023900 Sorghum bicolor Sb07g023900 I 0.964
Sb04g037720 Sorghum bicolor Sb04g037720 I 0.940
Gorai.012G007000 Gossypium raimondii Gorai.012G007000 I 0.896
chr5.CM0909.750.nc Lotus japonicus chr5.CM0909.750.nc I 0.887
Thhalv10020745m.g Eutrema salsugineum Thhalv10020745m.g I 0.897
Thhalv10020717m.g Eutrema salsugineum Thhalv10020717m.g I 0.897
SapurV1A.0213s0310 Salix purpurea SapurV1A.0213s0310 I 0.897
Pavir.Fa00048 Panicum virgatum Pavir.Fa00048 I 0.966
Pavir.Ab03009 Panicum virgatum Pavir.Ab03009 I 0.940
Pavir.Aa00085 Panicum virgatum Pavir.Aa00085 I 0.941
orange1.1g014130m.g Citrus sinensis orange1.1g014130m.g I 0.889
Lus10038670.g Linum usitatissimum Lus10038670.g I 0.899
Lus10037939.g Linum usitatissimum Lus10037939.g I 0.899
PGSC0003DMG402023373 Solanum tuberosum PGSC0003DMG402023373 I 0.878
Gorai.011G234200 Gossypium raimondii Gorai.011G234200 I 0.887
Gorai.009G309300 Gossypium raimondii Gorai.009G309300 I 0.903
Eucgr.J01038 Eucalyptus grandis Eucgr.J01038 I 0.873
Ciclev10031606m.g Citrus clementina Ciclev10031606m.g I 0.889
Carubv10013694m.g Capsella rubella Carubv10013694m.g I 0.902
Carubv10013564m.g Capsella rubella Carubv10013564m.g I 0.897
Carubv10003768m.g Capsella rubella Carubv10003768m.g I 0.873
Cagra.9217s0020 Capsella grandiflora Cagra.9217s0020 I 0.873
Cagra.0834s0029 Capsella grandiflora Cagra.0834s0029 I 0.902
Bra034119 Brassica rapa Bra034119 I 0.883
GRMZM2G125777 Zea mays GRMZM2G125777 I 0.953
GRMZM2G113950 Zea mays GRMZM2G113950 I 0.940
GLYMA20G33430 Glycine max GLYMA20G33430 I 0.887
GLYMA10G34130 Glycine max GLYMA10G34130 I 0.887
ANAC052 Arabidopsis lyrata fgenesh2_kg.3__1083__AT3G10490.2 I 0.902
ANAC050 Arabidopsis lyrata fgenesh1_pm.C_scaffold_3000864 I 0.902
F775_27564 Aegilops tauschii F775_27564 I 0.964
BRADI3G56080 Brachypodium distachyon BRADI3G56080 I 0.941
BRADI3G12470 Brachypodium distachyon BRADI3G12470 I 0.956
LPERR08G20450 Leersia perrieri LPERR08G20450 I 0.960
Bra034118 Brassica rapa Bra034118 I 0.898
Bra029844 Brassica rapa Bra029844 I 0.871
Bra001366 Brassica rapa Bra001366 I 0.872
Bo5g137360 Brassica oleracea Bo5g137360 I 0.871
Bo1g143850 Brassica oleracea Bo1g143850 I 0.898
Bo1g143840 Brassica oleracea Bo1g143840 I 0.883
BGIOSGA026481 Oryza indica BGIOSGA026481 I 0.954
BGIOSGA009316 Oryza indica BGIOSGA009316 I 0.926
ANAC052 Arabidopsis thaliana AT3G10490 I 0.891
OMERI08G18580 Oryza meridionalis OMERI08G18580 I 0.954
OS08G0562200 Oryza sativa OS08G0562200 I 0.954
OS02G0822400 Oryza sativa OS02G0822400 I 0.926
ORUFI08G26250 Oryza rufipogon ORUFI08G26250 I 0.954
ORUFI02G39260 Oryza rufipogon ORUFI02G39260 I 0.926
ORGLA08G0191600 Oryza glaberrima ORGLA08G0191600 I 0.954
ORGLA02G0329400 Oryza glaberrima ORGLA02G0329400 I 0.926
OPUNC08G21700 Oryza punctata OPUNC08G21700 I 0.954
OPUNC02G34910 Oryza punctata OPUNC02G34910 I 0.926
ONIVA08G26810 Oryza nivara ONIVA08G26810 I 0.954
ONIVA02G40500 Oryza nivara ONIVA02G40500 I 0.926
POPTR_0010s23630 Populus trichocarpa POPTR_0010s23630 I 0.894
OLONG_023179 Oryza longistaminata OLONG_023179 I 0.954
OGLUM08G25240 Oryza glumaepatula OGLUM08G25240 I 0.954
OGLUM02G38880 Oryza glumaepatula OGLUM02G38880 I 0.926
OBART08G23760 Oryza barthii OBART08G23760 I 0.954
OBART02G37700 Oryza barthii OBART02G37700 I 0.926
OB08G30590 Oryza brachyantha OB08G30590 I 0.963
OB02G44540 Oryza brachyantha OB02G44540 I 0.926
MTR_1g090720 Medicago truncatula MTR_1g090720 I 0.888
LPERR02G31180 Leersia perrieri LPERR02G31180 N 0.918