CBN10913 (Caenorhabditis brenneri)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00105 (zf-C4) IPR001628 CBN10913 T301734_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NR2E1
M02394_2.00 		Homo sapiens
NGAGGTCARN
NYTGACCTCN		 PBM
Weirauch et al.(2014)
pTH6281 		0.828 0.657
Nr2e1
M00814_2.00 		Mus musculus
NNNGTYRNNN
NNNYRACNNN		 PBM
Weirauch et al.(2013)
pTH2936 		0.828 0.657
A1YGC6_PANPA
M02421_2.00 		Pan paniscus
NNGTCANNN
NNNTGACNN		 PBM
Weirauch et al.(2014)
pTH5561 		0.828 0.657
NR2E1
M03364_2.00 		Homo sapiens
WDAAGTCAA
TTGACTTHW		 SELEX
Jolma et al.(2013)
NR2E1_1 		0.828 0.657
NR2E1
M03365_2.00 		Homo sapiens
RARTCAWDAAGTCA
TGACTTHWTGAYTY		 SELEX
Jolma et al.(2013)
NR2E1_2 		0.828 0.657
Nr2e1
M03427_2.00 		Mus musculus
WDAAGTCAW
WTGACTTHW		 SELEX
Jolma et al.(2013)
Nr2e1_1 		0.828 0.657
Nr2e1
M03428_2.00 		Mus musculus
RRGTCAWDAAGTCA
TGACTTHWTGACYY		 SELEX
Jolma et al.(2013)
Nr2e1_2 		0.828 0.657
NR2E1
M05585_2.00 		Homo sapiens
NNAAGTCAN
NTGACTTNN		 SELEX
Yin et al.(2017)
NR2E1_FL_HT-SELEX 		0.828 0.657
NR2E1
M05586_2.00 		Homo sapiens
NDAAGTCAN
NTGACTTHN		 SELEX
Yin et al.(2017)
NR2E1_FL_Methyl-HT-SELEX 		0.828 0.657
dsf
M06431_2.00 		Drosophila melanogaster
AAAAGTCANH
DNTGACTTTT		 B1H
Zhu et al.(2011)
dsf_SANGER_5_FBgn0015381 		0.801 0.614
usp
M03934_2.00 		Drosophila melanogaster
ARRGGTCAAAGGTCA
TGACCTTTGACCYYT		 SELEX
Nitta et al.(2015)
usp_1 		0.776 0.571
usp
M06426_2.00 		Drosophila melanogaster
HRRGGTCAH
DTGACCYYD		 B1H
Zhu et al.(2011)
usp_SANGER_5_FBgn0003964 		0.776 0.571
usp
M02709_2.00 		Drosophila melanogaster
GGGGTCACSN
NSGTGACCCC		 SELEX
Mathelier et al.(2014)
MA0016.1 		0.776 0.571
usp
M09689_2.00 		Drosophila melanogaster
KRGGTCACG
CGTGACCYM		 Misc
Kulakovskiy et al.(2009)
usp 		0.776 0.571
usp
M11191_2.00 		Drosophila melanogaster
GRGGTCAYS
SRTGACCYC		 Transfac
Matys et al.(2006)
I$CF1_01 		0.776 0.571
usp
M11192_2.00 		Drosophila melanogaster
GGGGTCAYS
SRTGACCCC		 Transfac
Matys et al.(2006)
I$CF1_02 		0.776 0.571
Rxrb
M02402_2.00 		Mus musculus
VRGGTCAH
DTGACCYB		 PBM
Weirauch et al.(2014)
pTH2861 		0.750 0.586
RXRB
M03415_2.00 		Homo sapiens
RRGGTCAAAGGTCA
TGACCTTTGACCYY		 SELEX
Jolma et al.(2013)
RXRB_1 		0.750 0.586
Rxrb
M03435_2.00 		Mus musculus
GRGGTCAAAGGTCA
TGACCTTTGACCYC		 SELEX
Jolma et al.(2013)
Rxrb_1 		0.750 0.586
RXRB
M05681_2.00 		Homo sapiens
RRGGTCAAAGGTCAN
NTGACCTTTGACCYY		 SELEX
Yin et al.(2017)
RXRB_eDBD_HT-SELEX_1 		0.750 0.586
RXRB
M05682_2.00 		Homo sapiens
RRGGTCAYGACCYY
RRGGTCRTGACCYY		 SELEX
Yin et al.(2017)
RXRB_eDBD_HT-SELEX_2 		0.750 0.586
RXRB
M09297_2.00 		Homo sapiens
DSAGGTCASD
HSTGACCTSH		 Misc
Kulakovskiy et al.(2013)
RXRB_HUMAN.H11MO.0.C 		0.750 0.586
Rxrb
M09330_2.00 		Mus musculus
DSAGGTCASD
HSTGACCTSH		 Misc
Kulakovskiy et al.(2013)
RXRB_MOUSE.H11MO.0.C 		0.750 0.586
RXRB
M05683_2.00 		Homo sapiens
RRGGTCAAAGGTCRN
NYGACCTTTGACCYY		 SELEX
Yin et al.(2017)
RXRB_eDBD_Methyl-HT-SELEX_1 		0.750 0.586
RXRB
M05684_2.00 		Homo sapiens
RRGGTCRYGACCYY
RRGGTCRYGACCYY		 SELEX
Yin et al.(2017)
RXRB_eDBD_Methyl-HT-SELEX_2 		0.750 0.586
Rxra
M00181_2.00 		Mus musculus
NRRGGTCANN
NNTGACCYYN		 PBM
Badis et al.(2009)
Rxra_1035 		0.745 0.586
RXRA
M03408_2.00 		Homo sapiens
RRGGTCAAAGGTCA
TGACCTTTGACCYY		 SELEX
Jolma et al.(2013)
RXRA_1 		0.745 0.586
RXRA
M03409_2.00 		Homo sapiens
RRGGTCATGACCYY
RRGGTCATGACCYY		 SELEX
Jolma et al.(2013)
RXRA_2 		0.745 0.586
RXRA
M03410_2.00 		Homo sapiens
RRGGTCAAAGGTCA
TGACCTTTGACCYY		 SELEX
Jolma et al.(2013)
RXRA_3 		0.745 0.586
RXRA
M03411_2.00 		Homo sapiens
RRGGTCATGACCYY
RRGGTCATGACCYY		 SELEX
Jolma et al.(2013)
RXRA_4 		0.745 0.586
Rxra
M03421_2.00 		Mus musculus
RRGGTCAAAGGTCA
TGACCTTTGACCYY		 SELEX
Jolma et al.(2013)
Rxra_1 		0.745 0.586
Rxra
M03422_2.00 		Mus musculus
RGGTCATGACCY
RGGTCATGACCY		 SELEX
Jolma et al.(2013)
Rxra_2 		0.745 0.586
RXRA
M05671_2.00 		Homo sapiens
RRGGTCAAAGGTCAN
NTGACCTTTGACCYY		 SELEX
Yin et al.(2017)
RXRA_eDBD_HT-SELEX 		0.745 0.586
RXRA
M05882_2.00 		Homo sapiens
VRGKTBAAAGGTYRH
DYRACCTTTVAMCYB		 SMiLE-seq
Isakova et al.(2017)
RXRa 		0.745 0.586
RXRA
M07993_2.00 		Homo sapiens
NRRGGTCA
TGACCYYN		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_RXRA_HudsonAlpha 		0.745 0.586
RXRA
M07994_2.00 		Homo sapiens
DDNNMRRGGTCANDN
NHNTGACCYYKNNHH		 ChIP-seq
Gerstein et al.(2012)
HepG2_RXRA_HudsonAlpha 		0.745 0.586
RXRA
M09294_2.00 		Homo sapiens
VDDDNDNNVRRRGGKCAVDV
BHBTGMCCYYYBNNHNHHHB		 Misc
Kulakovskiy et al.(2013)
RXRA_HUMAN.H11MO.0.A 		0.745 0.586
Rxra
M09306_2.00 		Mus musculus
DDVNNNNNRAGKTCAAGGYCA
TGRCCTTGAMCTYNNNNNBHH		 Misc
Kulakovskiy et al.(2013)
RXRA_MOUSE.H11MO.0.A 		0.745 0.586
RXRA
M11182_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RXRA_07 		0.745 0.586
RXRA
M05672_2.00 		Homo sapiens
RRGGTCAAAGGTCAH
DTGACCTTTGACCYY		 SELEX
Yin et al.(2017)
RXRA_eDBD_Methyl-HT-SELEX 		0.745 0.586
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CBN10913 Nuclear receptor 10 79

Links

Other Nuclear receptor family TFs
Other Caenorhabditis brenneri TFs

453 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
APRR2 Arabidopsis thaliana AT4G18020 D 0.000
Cucsa.321580 Cucumis sativus Cucsa.321580 I 0.000
PGSC0003DMG400026587 Solanum tuberosum PGSC0003DMG400026587 I 0.000
Cucsa.313480 Cucumis sativus Cucsa.313480 I 0.000
cassava42048.valid.m1 Manihot esculenta cassava42048.valid.m1 I 0.000
cassava42047.valid.m1 Manihot esculenta cassava42047.valid.m1 I 0.000
cassava2466.valid.m1 Manihot esculenta cassava2466.valid.m1 I 0.000
30054.m000786 Ricinus communis 30054.m000786 I 0.000
Pm014733 Prunus mume Pm014733 I 0.000
Cla016403 Citrullus lanatus Cla016403 I 0.000
Cla008926 Citrullus lanatus Cla008926 I 0.000
Ca_24009 Cicer arietinum Ca_24009 I 0.000
Ca_12825 Cicer arietinum Ca_12825 I 0.000
Ca_02285 Cicer arietinum Ca_02285 I 0.000
APRR2 Vitis vinifera VIT_02s0012g00570 I 0.000
Traes_7DL_58DDB90E3 Triticum aestivum Traes_7DL_58DDB90E3 I 0.000
TCM_015780 Theobroma cacao TCM_015780 I 0.000
Solyc08g077230.2 Solanum lycopersicum Solyc08g077230.2 I 0.000
Solyc06g061030.2 Solanum lycopersicum Solyc06g061030.2 I 0.000
Si006400m.g Setaria italica Si006400m.g I 0.000
Si001336m.g Setaria italica Si001336m.g I 0.000
Sb10g008400 Sorghum bicolor Sb10g008400 I 0.000
Sb03g000400 Sorghum bicolor Sb03g000400 I 0.000
PRUPE_ppa004161mg Prunus persica PRUPE_ppa004161mg I 0.000
POPTR_0001s02910 Populus trichocarpa POPTR_0001s02910 I 0.000
PDK_20s1585631g001 Phoenix dactylifera PDK_20s1585631g001 I 0.000
Lus10040109.g Linum usitatissimum Lus10040109.g I 0.000
AMTR_s00149p00035260 Amborella trichopoda AMTR_s00149p00035260 I 0.000
chr4.CM0831.100.nd Lotus japonicus chr4.CM0831.100.nd I 0.000
chr2.CM0021.770.nc Lotus japonicus chr2.CM0021.770.nc I 0.000
PK19826.1 Cannabis sativa PK19826.1 I 0.000
Thhalv10024919m.g Eutrema salsugineum Thhalv10024919m.g I 0.000
SapurV1A.1296s0050 Salix purpurea SapurV1A.1296s0050 I 0.000
Pavir.Eb00063 Panicum virgatum Pavir.Eb00063 I 0.000
Pavir.Ea00014 Panicum virgatum Pavir.Ea00014 I 0.000
Pavir.Db01285 Panicum virgatum Pavir.Db01285 I 0.000
orange1.1g008254m.g Citrus sinensis orange1.1g008254m.g I 0.000
MDP0000248863 Malus domestica MDP0000248863 I 0.000
MDP0000237396 Malus domestica MDP0000237396 I 0.000
Aquca_044_00072 Aquilegia coerulea Aquca_044_00072 I 0.000
Lus10011044.g Linum usitatissimum Lus10011044.g I 0.000
Gorai.008G228800 Gossypium raimondii Gorai.008G228800 I 0.000
Gorai.004G188300 Gossypium raimondii Gorai.004G188300 I 0.000
Gorai.003G180100 Gossypium raimondii Gorai.003G180100 I 0.000
gene10484-v1.0-hybrid Fragaria vesca gene10484-v1.0-hybrid I 0.000
evm.TU.supercontig_6.428 Carica papaya evm.TU.supercontig_6.428 I 0.000
Eucgr.E00308 Eucalyptus grandis Eucgr.E00308 I 0.000
Ciclev10031120m.g Citrus clementina Ciclev10031120m.g I 0.000
Carubv10004540m.g Capsella rubella Carubv10004540m.g I 0.000
Cagra.1595s0002 Capsella grandiflora Cagra.1595s0002 I 0.000
Bostr.30275s0270 Boechera stricta Bostr.30275s0270 I 0.000
Bra036015 Brassica rapa Bra036015 I 0.000
GSMUA_Achr2G18200_001 Musa acuminata GSMUA_Achr2G18200_001 I 0.000
GSMUA_Achr2G15250_001 Musa acuminata GSMUA_Achr2G15250_001 I 0.000
GSMUA_Achr10G26160_001 Musa acuminata GSMUA_Achr10G26160_001 I 0.000
GRMZM2G087804 Zea mays GRMZM2G087804 I 0.000
GLYMA17G16360 Glycine max GLYMA17G16360 I 0.000
GLYMA11G04441 Glycine max GLYMA11G04441 I 0.000
GLYMA05G06070 Glycine max GLYMA05G06070 I 0.000
GLYMA01G40900 Glycine max GLYMA01G40900 I 0.000
APRR2 Arabidopsis lyrata fgenesh2_kg.7__2503__AT4G18020.2 I 0.000
F775_20285 Aegilops tauschii F775_20285 I 0.000
BRADI2G08287 Brachypodium distachyon BRADI2G08287 I 0.000
BRADI1G43710 Brachypodium distachyon BRADI1G43710 I 0.000
GSMUA_Achr6G05850_001 Musa acuminata GSMUA_Achr6G05850_001 I 0.000
Bra031129 Brassica rapa Bra031129 I 0.000
Bra013279 Brassica rapa Bra013279 I 0.000
Bra013278 Brassica rapa Bra013278 I 0.000
Bra013277 Brassica rapa Bra013277 I 0.000
Bra012623 Brassica rapa Bra012623 I 0.000
Bo8g102300 Brassica oleracea Bo8g102300 I 0.000
Bo7g105690 Brassica oleracea Bo7g105690 I 0.000
Bo7g003410 Brassica oleracea Bo7g003410 I 0.000
Bo1g019180 Brassica oleracea Bo1g019180 I 0.000
BGIOSGA022875 Oryza indica BGIOSGA022875 I 0.000
BGIOSGA002040 Oryza indica BGIOSGA002040 I 0.000
OMERI01G08840 Oryza meridionalis OMERI01G08840 I 0.000
GLK1 Oryza sativa OS06G0348800 I 0.000
GLK2 Oryza sativa OS01G0239000 I 0.000
ORUFI06G15000 Oryza rufipogon ORUFI06G15000 I 0.000
ORUFI01G09620 Oryza rufipogon ORUFI01G09620 I 0.000
ORGLA06G0126200 Oryza glaberrima ORGLA06G0126200 I 0.000
ORGLA01G0079000 Oryza glaberrima ORGLA01G0079000 I 0.000
OPUNC06G13180 Oryza punctata OPUNC06G13180 I 0.000
OPUNC01G08680 Oryza punctata OPUNC01G08680 I 0.000
ONIVA06G16920 Oryza nivara ONIVA06G16920 I 0.000
ONIVA01G11450 Oryza nivara ONIVA01G11450 I 0.000
OMERI06G15340 Oryza meridionalis OMERI06G15340 I 0.000
PGSC0003DMG400024217 Solanum tuberosum PGSC0003DMG400024217 I 0.000
OGLUM06G15080 Oryza glumaepatula OGLUM06G15080 I 0.000
OGLUM01G10130 Oryza glumaepatula OGLUM01G10130 I 0.000
OBART03G02540 Oryza barthii OBART03G02540 I 0.000
OB06G22250 Oryza brachyantha OB06G22250 I 0.000
OB01G18980 Oryza brachyantha OB01G18980 I 0.000
MTR_5g014040 Medicago truncatula MTR_5g014040 I 0.000
MTR_4g098870 Medicago truncatula MTR_4g098870 I 0.000
MLOC_43537 Hordeum vulgare MLOC_43537 I 0.000
LPERR06G12880 Leersia perrieri LPERR06G12880 I 0.000
LPERR01G08320 Leersia perrieri LPERR01G08320 I 0.000
GSMUA_Achr7G11040_001 Musa acuminata GSMUA_Achr7G11040_001 I 0.000