CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Minc04628
(
Meloidogyne incognita
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00105 (zf-C4)
IPR001628
Minc04628
T307362_2.00
Superfamily (2010-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Minc04628
Nuclear receptor
556
636
RECRKSFCECKENVCFHYGVCTCRACGAFFRRYLENEKKSKYNICKCLHKQMLLKESKIERNWEKCKKCRLDKCFSVGMKK
Links
Other
Nuclear receptor
family TFs
Other
Meloidogyne incognita
TFs
28 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Minc11357
Meloidogyne incognita
Minc11357
N
0.795
MhA1_Contig311.frz3.gene3
Meloidogyne hapla
MhA1_Contig311.frz3.gene3
N
0.916
maker-nMf.1.1.scaf11243-snap-gene-0.6
Meloidogyne floridensis
maker-nMf.1.1.scaf11243-snap-gene-0.6
N
0.748
maker-nMf.1.1.scaf08516-augustus-gene-0.5
Meloidogyne floridensis
maker-nMf.1.1.scaf08516-augustus-gene-0.5
N
0.979
maker-nMf.1.1.scaf08489-snap-gene-0.4
Meloidogyne floridensis
maker-nMf.1.1.scaf08489-snap-gene-0.4
N
0.798
maker-nMf.1.1.scaf03855-augustus-gene-0.7
Meloidogyne floridensis
maker-nMf.1.1.scaf03855-augustus-gene-0.7
N
0.967
genemark-nMf.1.1.scaf00124-processed-gene-0.5
Meloidogyne floridensis
genemark-nMf.1.1.scaf00124-processed-gene-0.5
N
0.822
augustus_masked-nMf.1.1.scaf08848-processed-gene-0.1
Meloidogyne floridensis
augustus_masked-nMf.1.1.scaf08848-processed-gene-0.1
N
0.967
augustus_masked-nMf.1.1.scaf07814-processed-gene-0.0
Meloidogyne floridensis
augustus_masked-nMf.1.1.scaf07814-processed-gene-0.0
N
0.818
augustus_masked-nMf.1.1.scaf07071-processed-gene-0.0
Meloidogyne floridensis
augustus_masked-nMf.1.1.scaf07071-processed-gene-0.0
N
0.885
augustus_masked-nMf.1.1.scaf03183-processed-gene-0.0
Meloidogyne floridensis
augustus_masked-nMf.1.1.scaf03183-processed-gene-0.0
N
0.874
Minc18240
Meloidogyne incognita
Minc18240
N
0.755
Minc11362
Meloidogyne incognita
Minc11362
N
0.909
Minc11361
Meloidogyne incognita
Minc11361
N
0.967
Minc02822
Meloidogyne incognita
Minc02822
N
0.979
Minc06648
Meloidogyne incognita
Minc06648
N
0.765
Minc05955
Meloidogyne incognita
Minc05955
N
0.751
Minc05953
Meloidogyne incognita
Minc05953
N
0.792
Minc05948
Meloidogyne incognita
Minc05948
N
0.795
Minc05946
Meloidogyne incognita
Minc05946
N
0.835
Minc05944
Meloidogyne incognita
Minc05944
N
0.881
Minc05939
Meloidogyne incognita
Minc05939
N
0.875
Minc05938
Meloidogyne incognita
Minc05938
N
0.967
Minc04734
Meloidogyne incognita
Minc04734
N
0.989
Minc03951
Meloidogyne incognita
Minc03951
N
0.870
Minc03122
Meloidogyne incognita
Minc03122
N
0.795
Minc03116
Meloidogyne incognita
Minc03116
N
0.780
Minc03113
Meloidogyne incognita
Minc03113
N
0.874