CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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MhA1_Contig2339.frz3.gene1
(
Meloidogyne hapla
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00105 (zf-C4)
IPR001628
MhA1_Contig2339.frz3.gene1
T309642_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
MhA1_Contig2339.frz3.gene1
Nuclear receptor
38
107
TKCCICGYIASGYIFYNVKCCDGCKHFFRRCINAKDSLKCKNGENCDLNKSAIKCKSCRFDKCLLKGMYV
Links
Other
Nuclear receptor
family TFs
Other
Meloidogyne hapla
TFs
37 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
maker-nMf.1.1.scaf14574-augustus-gene-0.4
Meloidogyne floridensis
maker-nMf.1.1.scaf14574-augustus-gene-0.4
N
0.944
augustus_masked-nMf.1.1.scaf10396-processed-gene-0.0
Meloidogyne floridensis
augustus_masked-nMf.1.1.scaf10396-processed-gene-0.0
N
0.972
maker-nMf.1.1.scaf00198-snap-gene-0.24
Meloidogyne floridensis
maker-nMf.1.1.scaf00198-snap-gene-0.24
N
0.865
maker-nMf.1.1.scaf03265-augustus-gene-0.7
Meloidogyne floridensis
maker-nMf.1.1.scaf03265-augustus-gene-0.7
N
0.980
maker-nMf.1.1.scaf04006-snap-gene-0.9
Meloidogyne floridensis
maker-nMf.1.1.scaf04006-snap-gene-0.9
N
0.770
maker-nMf.1.1.scaf06148-augustus-gene-0.3
Meloidogyne floridensis
maker-nMf.1.1.scaf06148-augustus-gene-0.3
N
0.892
maker-nMf.1.1.scaf06196-snap-gene-0.8
Meloidogyne floridensis
maker-nMf.1.1.scaf06196-snap-gene-0.8
N
0.978
maker-nMf.1.1.scaf06884-augustus-gene-0.5
Meloidogyne floridensis
maker-nMf.1.1.scaf06884-augustus-gene-0.5
N
0.920
maker-nMf.1.1.scaf08255-snap-gene-0.4
Meloidogyne floridensis
maker-nMf.1.1.scaf08255-snap-gene-0.4
N
0.921
maker-nMf.1.1.scaf11763-augustus-gene-0.3
Meloidogyne floridensis
maker-nMf.1.1.scaf11763-augustus-gene-0.3
N
0.982
augustus_masked-nMf.1.1.scaf06920-processed-gene-0.0
Meloidogyne floridensis
augustus_masked-nMf.1.1.scaf06920-processed-gene-0.0
N
0.984
maker-nMf.1.1.scaf15444-snap-gene-0.4
Meloidogyne floridensis
maker-nMf.1.1.scaf15444-snap-gene-0.4
N
0.984
MhA1_Contig1386.frz3.gene10
Meloidogyne hapla
MhA1_Contig1386.frz3.gene10
N
0.968
MhA1_Contig2339.frz3.gene2
Meloidogyne hapla
MhA1_Contig2339.frz3.gene2
N
0.989
MhA1_Contig392.frz3.gene14
Meloidogyne hapla
MhA1_Contig392.frz3.gene14
N
0.759
MhA1_Contig41.frz3.gene12
Meloidogyne hapla
MhA1_Contig41.frz3.gene12
N
0.955
MhA1_Contig790.frz3.gene2
Meloidogyne hapla
MhA1_Contig790.frz3.gene2
N
0.984
MhA1_Contig790.frz3.gene5
Meloidogyne hapla
MhA1_Contig790.frz3.gene5
N
0.984
MhA1_Contig988.frz3.gene1
Meloidogyne hapla
MhA1_Contig988.frz3.gene1
N
0.834
Minc13321
Meloidogyne incognita
Minc13321
N
0.978
Minc02055
Meloidogyne incognita
Minc02055
N
0.920
Minc03976
Meloidogyne incognita
Minc03976
N
0.865
Minc04725
Meloidogyne incognita
Minc04725
N
0.978
Minc07962
Meloidogyne incognita
Minc07962
N
0.944
Minc07964
Meloidogyne incognita
Minc07964
N
0.944
Minc09140
Meloidogyne incognita
Minc09140
N
0.942
Minc09142
Meloidogyne incognita
Minc09142
N
0.920
Minc09143
Meloidogyne incognita
Minc09143
N
0.920
Minc02054
Meloidogyne incognita
Minc02054
N
0.942
Minc13448
Meloidogyne incognita
Minc13448
N
0.982
Minc14854
Meloidogyne incognita
Minc14854
N
0.944
Minc15187
Meloidogyne incognita
Minc15187
N
0.914
Minc15189
Meloidogyne incognita
Minc15189
N
0.959
Minc17464
Meloidogyne incognita
Minc17464
N
0.978
Minc17667
Meloidogyne incognita
Minc17667
N
0.891
Minc18661
Meloidogyne incognita
Minc18661
N
0.926
Minc18991
Meloidogyne incognita
Minc18991
N
0.892