LCORL (Oryctolagus cuniculus)
Pipsqueak

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF05225 (HTH_psq) IPR007889 ENSOCUG00000006802 T313587_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LCORL
M01304_2.00 		Homo sapiens
HYNAAWHN
NDWTTNRD		 PBM
Lambert et al.(2019)
pTH11267 		1.000 1.000
For this family, TFs with SR scores > 0.778 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSOCUP00000005879 Pipsqueak 276 313
ENSOCUP00000005879 Pipsqueak 525 570
ENSOCUP00000026517 Pipsqueak 276 313
ENSOCUP00000026517 Pipsqueak 525 565

Links

Other Pipsqueak family TFs
Other Oryctolagus cuniculus TFs

53 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
LCORL Homo sapiens ENSG00000178177 D 0.988
LCORL Tursiops truncatus ENSTTRG00000016951 I 0.988
LCORL Otolemur garnettii ENSOGAG00000005593 I 1.000
ENSPANG00000024022 Papio anubis ENSPANG00000024022 I 1.000
LCORL Procavia capensis ENSPCAG00000007105 I 0.988
ENSPSIG00000017051 Pelodiscus sinensis ENSPSIG00000017051 I 1.000
LCORL Pan troglodytes ENSPTRG00000015943 I 1.000
LCORL Pteropus vampyrus ENSPVAG00000013601 I 0.988
ENSSHAG00000015746 Sarcophilus harrisii ENSSHAG00000015746 I 0.988
LCORL Sus scrofa ENSSSCG00000008748 I 1.000
ENSSTOG00000000960 Ictidomys tridecemlineatus ENSSTOG00000000960 I 0.988
LCORL Taeniopygia guttata ENSTGUG00000009625 I 1.000
ENSTSYG00000014055 Tarsius syrichta ENSTSYG00000014055 I 0.988
ENSNLEG00000016679 Nomascus leucogenys ENSNLEG00000016679 I 0.988
LCORL Vicugna pacos ENSVPAG00000010356 I 0.988
Aan_R007397 Calypte anna Aan_R007397 I 0.988
Afo_R006360 Aptenodytes forsteri Afo_R006360 I 1.000
Alligator_sinensis_CCG006744.1 Alligator sinensis Alligator_sinensis_CCG006744.1 I 1.000
Brh_R013202 Buceros rhinoceros Brh_R013202 I 1.000
ENSP00000371661-D1 Bos grunniens ENSP00000371661-D1 I 1.000
ENSP00000371661 Macaca fascicularis ENSP00000371661 I 0.988
Gfo_R010322 Geospiza fortis Gfo_R010322 I 1.000
Myotis_brandtii_LCORL_10024397 Myotis brandtii Myotis_brandtii_LCORL_10024397 I 0.988
Ogr00836 Ophisaurus gracilis Ogr00836 I 0.976
Pvit_18026 Pogona vitticeps Pvit_18026 I 1.000
Tal_R001804 Tyto alba Tal_R001804 I 1.000
ENSFALG00000009227 Ficedula albicollis ENSFALG00000009227 I 1.000
ENSAMEG00000000192 Ailuropoda melanoleuca ENSAMEG00000000192 I 0.988
ENSAPLG00000006384 Anas platyrhynchos ENSAPLG00000006384 I 1.000
LCORL Bos taurus ENSBTAG00000046561 I 1.000
LCORL Canis familiaris ENSCAFG00000016672 I 1.000
LCORL Callithrix jacchus ENSCJAG00000012800 I 1.000
ENSCPOG00000003269 Cavia porcellus ENSCPOG00000003269 I 1.000
ENSCSAG00000016522 Chlorocebus sabaeus ENSCSAG00000016522 I 0.988
lcorl Danio rerio ENSDARG00000070098 I 0.825
LCORL Dasypus novemcinctus ENSDNOG00000001545 I 1.000
ENSDORG00000003797 Dipodomys ordii ENSDORG00000003797 I 0.988
LCORL Equus caballus ENSECAG00000000648 I 0.988
LCORL Erinaceus europaeus ENSEEUG00000000419 I 0.988
ENSOARG00000004333 Ovis aries ENSOARG00000004333 I 1.000
LCORL Felis catus ENSFCAG00000029474 I 0.988
LCORL Gallus gallus ENSGALG00000014421 I 1.000
LCORL Gorilla gorilla ENSGGOG00000014894 I 1.000
ENSLACG00000017771 Latimeria chalumnae ENSLACG00000017771 I 0.988
LCORL Loxodonta africana ENSLAFG00000009691 I 0.988
LCORL Meleagris gallopavo ENSMGAG00000012554 I 1.000
ENSMICG00000008878 Microcebus murinus ENSMICG00000008878 I 0.988
LCORL Myotis lucifugus ENSMLUG00000013781 I 0.988
LCORL Monodelphis domestica ENSMODG00000000757 I 1.000
ENSMPUG00000002301 Mustela putorius furo ENSMPUG00000002301 I 1.000
Lcorl Mus musculus ENSMUSG00000015882 I 1.000
LCORL Anolis carolinensis ENSACAG00000002012 I 0.988