CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Alligator_sinensis_CCG020164.1
(
Alligator sinensis
)
Pipsqueak
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF05225 (HTH_psq)
IPR007889
Alligator_sinensis_CCG020164.1
T314417_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ENSMGAG00000009953
M02433_2.00
Meleagris gallopavo
NNNYNAAWNN
NNWTTNRNNN
PBM
Weirauch et al.(2014)
pTH8649
1.000
1.000
ENSACAG00000012432
M02430_2.00
Anolis carolinensis
NNNCNAAWNN
NNWTTNGNNN
PBM
Weirauch et al.(2014)
pTH9220
0.956
0.956
lcorl
M02438_2.00
Xenopus tropicalis
NYCNAAWHN
NDWTTNGRN
PBM
Weirauch et al.(2014)
pTH8558
0.956
0.956
ENSORLG00000000044
M02434_2.00
Oryzias latipes
CCCAAAWT
AWTTTGGG
PBM
Weirauch et al.(2014)
pTH9275
0.911
0.911
ENSGACG00000007469
M02432_2.00
Gasterosteus aculeatus
NVNMGAWACH
DGTWTCKNBN
PBM
Weirauch et al.(2014)
pTH9179
0.822
0.822
ENSORLG00000007805
M02435_2.00
Oryzias latipes
SCNAAWNNNN
NNNNWTTNGS
PBM
Weirauch et al.(2014)
pTH9277
0.822
0.822
LCORL
M02431_2.00
Choloepus hoffmanni
NNYNAAHNN
NNDTTNRNN
PBM
Weirauch et al.(2014)
pTH9253
0.800
0.800
For this family, TFs with SR scores >
0.778
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Alligator_sinensis_CCG020164.1
Pipsqueak
350
395
NSEILEEAISVVMSGKMSVSKAQSIYGIPHSTLEYKVKERLGTLKN
Links
Other
Pipsqueak
family TFs
Other
Alligator sinensis
TFs
74 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ENSORLG00000000044
Oryzias latipes
ENSORLG00000000044
D
0.911
lcorl
Xenopus tropicalis
XB-GENE-995017
D
0.956
ENSORLG00000007805
Oryzias latipes
ENSORLG00000007805
D
0.822
ENSACAG00000012432
Anolis carolinensis
ENSACAG00000012432
D
0.956
ENSMGAG00000009953
Meleagris gallopavo
ENSMGAG00000009953
D
1.000
ENSGACG00000007469
Gasterosteus aculeatus
ENSGACG00000007469
D
0.841
LCORL
Homo sapiens
ENSG00000178177
D
0.800
LCORL
Choloepus hoffmanni
ENSCHOG00000006922
D
0.800
ENSTRUG00000008704
Takifugu rubripes
ENSTRUG00000008704
I
0.909
ENSTTRG00000009856
Tursiops truncatus
ENSTTRG00000009856
I
1.000
lcor
Takifugu rubripes
ENSTRUG00000006194
I
0.939
lcor
Tetraodon nigroviridis
ENSTNIG00000003614
I
0.933
ENSTGUG00000009834
Taeniopygia guttata
ENSTGUG00000009834
I
1.000
LCORL
Tupaia belangeri
ENSTBEG00000012926
I
0.800
ENSTBEG00000005837
Tupaia belangeri
ENSTBEG00000005837
I
1.000
ENSSTOG00000010808
Ictidomys tridecemlineatus
ENSSTOG00000010808
I
1.000
ENSSSCG00000010511
Sus scrofa
ENSSSCG00000010511
I
1.000
ENSSHAG00000018667
Sarcophilus harrisii
ENSSHAG00000018667
I
1.000
ENSSARG00000008230
Sorex araneus
ENSSARG00000008230
I
1.000
Lcor
Rattus norvegicus
ENSRNOG00000042679
I
1.000
ENSPVAG00000003364
Pteropus vampyrus
ENSPVAG00000003364
I
1.000
LCOR
Pan troglodytes
ENSPTRG00000002800
I
1.000
ENSPSIG00000009179
Pelodiscus sinensis
ENSPSIG00000009179
I
1.000
ENSPMAG00000003112
Petromyzon marinus
ENSPMAG00000003112
I
0.822
ENSBTAP00000005261-D1
Bos grunniens
ENSBTAP00000005261-D1
I
1.000
ENSAMEG00000000186
Ailuropoda melanoleuca
ENSAMEG00000000186
I
1.000
Tal_R010723
Tyto alba
Tal_R010723
I
1.000
Pvit_17823
Pogona vitticeps
Pvit_17823
I
1.000
Ogr16502
Ophisaurus gracilis
Ogr16502
I
1.000
Myotis_brandtii_LCORL_10024398
Myotis brandtii
Myotis_brandtii_LCORL_10024398
I
0.800
Myotis_brandtii_LCOR_10025723
Myotis brandtii
Myotis_brandtii_LCOR_10025723
I
1.000
Gfo_R002325
Geospiza fortis
Gfo_R002325
I
1.000
ENSP00000360138
Macaca fascicularis
ENSP00000360138
I
1.000
ENSPFOG00000009902
Poecilia formosa
ENSPFOG00000009902
I
0.911
Cmyd_10003742
Chelonia mydas
Cmyd_10003742
I
1.000
Brh_R001506
Buceros rhinoceros
Brh_R001506
I
1.000
Afo_R002709
Aptenodytes forsteri
Afo_R002709
I
1.000
Aan_R012556
Calypte anna
Aan_R012556
I
1.000
ENSXMAG00000005637
Xiphophorus maculatus
ENSXMAG00000005637
I
0.911
ENSXMAG00000002515
Xiphophorus maculatus
ENSXMAG00000002515
I
0.844
ENSVPAG00000007583
Vicugna pacos
ENSVPAG00000007583
I
1.000
ENSFCAG00000028121
Felis catus
ENSFCAG00000028121
I
1.000
ENSLAFG00000014271
Loxodonta africana
ENSLAFG00000014271
I
1.000
ENSLACG00000001265
Latimeria chalumnae
ENSLACG00000001265
I
0.978
ENSGMOG00000018278
Gadus morhua
ENSGMOG00000018278
I
0.844
ENSGGOG00000026110
Gorilla gorilla
ENSGGOG00000026110
I
1.000
ENSGALG00000023649
Gallus gallus
ENSGALG00000023649
I
1.000
ENSCAFG00000008905
Canis familiaris
ENSCAFG00000008905
I
1.000
LCOR
Homo sapiens
ENSG00000196233
I
1.000
ENSCHOG00000001981
Choloepus hoffmanni
ENSCHOG00000001981
I
1.000
ENSLOCG00000012823
Lepisosteus oculatus
ENSLOCG00000012823
I
0.978
ENSFALG00000008484
Ficedula albicollis
ENSFALG00000008484
I
1.000
ENSETEG00000015066
Echinops telfairi
ENSETEG00000015066
I
1.000
ENSECAG00000013517
Equus caballus
ENSECAG00000013517
I
1.000
lcor
Danio rerio
ENSDARG00000100908
I
0.933
ENSCSAG00000006043
Chlorocebus sabaeus
ENSCSAG00000006043
I
1.000
ENSCPOG00000005739
Cavia porcellus
ENSCPOG00000005739
I
1.000
ENSCJAG00000016484
Callithrix jacchus
ENSCJAG00000016484
I
1.000
ENSPFOG00000013017
Poecilia formosa
ENSPFOG00000013017
I
0.844
ENSBTAG00000004029
Bos taurus
ENSBTAG00000004029
I
1.000
ENSMICG00000007572
Microcebus murinus
ENSMICG00000007572
I
1.000
ENSMLUG00000000494
Myotis lucifugus
ENSMLUG00000000494
I
1.000
ENSMMUG00000010425
Macaca mulatta
ENSMMUG00000010425
I
1.000
ENSMODG00000004531
Monodelphis domestica
ENSMODG00000004531
I
1.000
Lcor
Mus musculus
ENSMUSG00000025019
I
1.000
ENSNLEG00000013648
Nomascus leucogenys
ENSNLEG00000013648
I
1.000
ENSOARG00000008725
Ovis aries
ENSOARG00000008725
I
1.000
ENSOGAG00000008137
Otolemur garnettii
ENSOGAG00000008137
I
1.000
ENSONIG00000000255
Oreochromis niloticus
ENSONIG00000000255
I
0.911
ENSONIG00000018331
Oreochromis niloticus
ENSONIG00000018331
I
0.889
ENSOPRG00000014745
Ochotona princeps
ENSOPRG00000014745
I
1.000
ENSAPLG00000003032
Anas platyrhynchos
ENSAPLG00000003032
I
1.000
ENSAMXG00000021599
Astyanax mexicanus
ENSAMXG00000021599
I
0.889
ENSPCAG00000007084
Procavia capensis
ENSPCAG00000007084
I
1.000