Gfo_R010322 (Geospiza fortis)
Pipsqueak

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF05225 (HTH_psq) IPR007889 Gfo_R010322 T314439_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LCORL
M01304_2.00 		Homo sapiens
HYNAAWHN
NDWTTNRD		 PBM
Lambert et al.(2019)
pTH11267 		1.000 1.000
For this family, TFs with SR scores > 0.778 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R010322 Pipsqueak 226 263
Gfo_R010322 Pipsqueak 475 520

Links

Other Pipsqueak family TFs
Other Geospiza fortis TFs

52 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
LBD6 Arabidopsis thaliana AT1G65620 D
LOB Arabidopsis thaliana AT5G63090 D
AC233943.1_FG002 Zea mays AC233943.1_FG002 I
AMTR_s00066p00120340 Amborella trichopoda AMTR_s00066p00120340 I
LBD25 Arabidopsis thaliana AT3G27650 I
Bo2g051420 Brassica oleracea Bo2g051420 I
Bo2g144870 Brassica oleracea Bo2g144870 I
Bo2g167820 Brassica oleracea Bo2g167820 I
Bo3g104760 Brassica oleracea Bo3g104760 I
Bo7g085860 Brassica oleracea Bo7g085860 I
Bo9g008330 Brassica oleracea Bo9g008330 I
Bo9g017470 Brassica oleracea Bo9g017470 I
Bra025294 Brassica rapa Bra025294 I
Bra033019 Brassica rapa Bra033019 I
Bra038606 Brassica rapa Bra038606 I
Bra039072 Brassica rapa Bra039072 I
Bra039733 Brassica rapa Bra039733 I
BRADI2G04270 Brachypodium distachyon BRADI2G04270 I
F775_25656 Aegilops tauschii F775_25656 I
AS2 Arabidopsis lyrata fgenesh2_kg.2__796__AT1G65620.2 I
LBD25 Arabidopsis lyrata fgenesh2_kg.5__545__AT3G27650.1 I
GLYMA04G36080 Glycine max GLYMA04G36080 I
GLYMA05G02530 Glycine max GLYMA05G02530 I
GLYMA05G08870 Glycine max GLYMA05G08870 I
GLYMA06G18861 Glycine max GLYMA06G18861 I
GLYMA13G26020 Glycine max GLYMA13G26020 I
GLYMA15G36310 Glycine max GLYMA15G36310 I
GLYMA16G07770 Glycine max GLYMA16G07770 I
GLYMA16G09720 Glycine max GLYMA16G09720 I
GLYMA17G09380 Glycine max GLYMA17G09380 I
GLYMA19G00390 Glycine max GLYMA19G00390 I
GLYMA19G12650 Glycine max GLYMA19G12650 I
GSMUA_Achr10G20760_001 Musa acuminata GSMUA_Achr10G20760_001 I
LPERR01G04140 Leersia perrieri LPERR01G04140 I
MTR_3g077240 Medicago truncatula MTR_3g077240 I
MTR_4g105170 Medicago truncatula MTR_4g105170 I
MTR_6g005070 Medicago truncatula MTR_6g005070 I
MTR_6g005080 Medicago truncatula MTR_6g005080 I
MTR_7g033800 Medicago truncatula MTR_7g033800 I
MTR_8g040900 Medicago truncatula MTR_8g040900 I
OB01G14220 Oryza brachyantha OB01G14220 I
OBART01G04470 Oryza barthii OBART01G04470 I
OGLUM01G04900 Oryza glumaepatula OGLUM01G04900 I
OLONG_009404 Oryza longistaminata OLONG_009404 I
OMERI01G04420 Oryza meridionalis OMERI01G04420 I
ONIVA01G04930 Oryza nivara ONIVA01G04930 I
ORGLA01G0040900 Oryza glaberrima ORGLA01G0040900 I
ORUFI01G04670 Oryza rufipogon ORUFI01G04670 I
OS01G0169400 Oryza sativa OS01G0169400 I
PGSC0003DMG400000974 Solanum tuberosum PGSC0003DMG400000974 I
PGSC0003DMG400006914 Solanum tuberosum PGSC0003DMG400006914 I
PGSC0003DMG400012629 Solanum tuberosum PGSC0003DMG400012629 I
PGSC0003DMG400018112 Solanum tuberosum PGSC0003DMG400018112 I
PGSC0003DMG400027078 Solanum tuberosum PGSC0003DMG400027078 I
POPTR_0001s35280 Populus trichocarpa POPTR_0001s35280 I
POPTR_0008s07930 Populus trichocarpa POPTR_0008s07930 I
POPTR_0010s18460 Populus trichocarpa POPTR_0010s18460 I
POPTR_0012s08540 Populus trichocarpa POPTR_0012s08540 I
POPTR_0015s09370 Populus trichocarpa POPTR_0015s09370 I
PRUPE_ppa018381mg Prunus persica PRUPE_ppa018381mg I
PRUPE_ppa023059mg Prunus persica PRUPE_ppa023059mg I
PRUPE_ppa027059mg Prunus persica PRUPE_ppa027059mg I
Sb03g004590 Sorghum bicolor Sb03g004590 I
LOB Arabidopsis lyrata scaffold_802995.1 I
SELMODRAFT_59324 Selaginella moellendorffii SELMODRAFT_59324 I
SELMODRAFT_68988 Selaginella moellendorffii SELMODRAFT_68988 I
Si002632m.g Setaria italica Si002632m.g I
Solyc02g067800.2 Solanum lycopersicum Solyc02g067800.2 I
Solyc02g086480.1 Solanum lycopersicum Solyc02g086480.1 I
Solyc03g063140.2 Solanum lycopersicum Solyc03g063140.2 I
Solyc03g112430.1 Solanum lycopersicum Solyc03g112430.1 I
Solyc06g071660.1 Solanum lycopersicum Solyc06g071660.1 I
Solyc11g008830.1 Solanum lycopersicum Solyc11g008830.1 I
TCM_012190 Theobroma cacao TCM_012190 I
TCM_016952 Theobroma cacao TCM_016952 I
TCM_024217 Theobroma cacao TCM_024217 I
TRIUR3_10339 Triticum urartu TRIUR3_10339 I
VIT_00s0215g00010 Vitis vinifera VIT_00s0215g00010 I
AS2 Vitis vinifera VIT_00s0340g00090 I
LBD25 Vitis vinifera VIT_14s0066g00680 I
LOB Vitis vinifera VIT_17s0000g09010 I
Ca_07463 Cicer arietinum Ca_07463 I
Ca_08824 Cicer arietinum Ca_08824 I
Ca_20200 Cicer arietinum Ca_20200 I
Ca_24372 Cicer arietinum Ca_24372 I
Cla003499 Citrullus lanatus Cla003499 I
Cla005851 Citrullus lanatus Cla005851 I
Cla010600 Citrullus lanatus Cla010600 I
Cla017388 Citrullus lanatus Cla017388 I
Cla019510 Citrullus lanatus Cla019510 I
Pm015649 Prunus mume Pm015649 I
Pm024312 Prunus mume Pm024312 I
29917.m001993 Ricinus communis 29917.m001993 I
29929.m004500 Ricinus communis 29929.m004500 I
30147.m013890 Ricinus communis 30147.m013890 I
cassava1141.valid.m1 Manihot esculenta cassava1141.valid.m1 I
cassava12464.valid.m1 Manihot esculenta cassava12464.valid.m1 I
cassava19770.m1 Manihot esculenta cassava19770.m1 I
cassava33952.m1 Manihot esculenta cassava33952.m1 I
cassava3724.m1 Manihot esculenta cassava3724.m1 I
Cucsa.011300 Cucumis sativus Cucsa.011300 I
Cucsa.098680 Cucumis sativus Cucsa.098680 I
Cucsa.178830 Cucumis sativus Cucsa.178830 I
Cucsa.196600 Cucumis sativus Cucsa.196600 I
Cucsa.339980 Cucumis sativus Cucsa.339980 I
gw1.12.172.1 Physcomitrella patens gw1.12.172.1 I
gw1.170.36.1 Physcomitrella patens gw1.170.36.1 I
gw1.170.40.1 Physcomitrella patens gw1.170.40.1 I
gw1.71.84.1 Physcomitrella patens gw1.71.84.1 I
mgf003146m Mimulus guttatus mgf003146m I
mgf014755m Mimulus guttatus mgf014755m I
mgf016361m Mimulus guttatus mgf016361m I
mgf024603m Mimulus guttatus mgf024603m I
Aquca_007_00083 Aquilegia coerulea Aquca_007_00083 I
Aquca_011_00559 Aquilegia coerulea Aquca_011_00559 I
Aquca_058_00006 Aquilegia coerulea Aquca_058_00006 I
Aquca_061_00084 Aquilegia coerulea Aquca_061_00084 I
Bostr.0556s0446 Boechera stricta Bostr.0556s0446 I
Bostr.0568s0498 Boechera stricta Bostr.0568s0498 I
Bostr.26959s0351 Boechera stricta Bostr.26959s0351 I
Cagra.10809s0001 Capsella grandiflora Cagra.10809s0001 I
Cagra.5118s0045 Capsella grandiflora Cagra.5118s0045 I
Cagra.5575s0004 Capsella grandiflora Cagra.5575s0004 I
Carubv10018238m.g Capsella rubella Carubv10018238m.g I
Carubv10020974m.g Capsella rubella Carubv10020974m.g I
Carubv10028397m.g Capsella rubella Carubv10028397m.g I
Ciclev10017006m.g Citrus clementina Ciclev10017006m.g I
Ciclev10017910m.g Citrus clementina Ciclev10017910m.g I
Ciclev10022371m.g Citrus clementina Ciclev10022371m.g I
Eucgr.C02148 Eucalyptus grandis Eucgr.C02148 I
Eucgr.I01750 Eucalyptus grandis Eucgr.I01750 I
Eucgr.J02237 Eucalyptus grandis Eucgr.J02237 I
Eucgr.K02809 Eucalyptus grandis Eucgr.K02809 I
evm.TU.supercontig_108.62 Carica papaya evm.TU.supercontig_108.62 I
evm.TU.supercontig_110.17 Carica papaya evm.TU.supercontig_110.17 I
evm.TU.supercontig_39.110 Carica papaya evm.TU.supercontig_39.110 I
gene21541-v1.0-hybrid Fragaria vesca gene21541-v1.0-hybrid I
gene28478-v1.0-hybrid Fragaria vesca gene28478-v1.0-hybrid I
gene31797-v1.0-hybrid Fragaria vesca gene31797-v1.0-hybrid I
Gorai.006G033100 Gossypium raimondii Gorai.006G033100 I
Gorai.007G075700 Gossypium raimondii Gorai.007G075700 I
Gorai.007G350300 Gossypium raimondii Gorai.007G350300 I
Gorai.012G063800 Gossypium raimondii Gorai.012G063800 I
Lus10013610.g Linum usitatissimum Lus10013610.g I
Lus10022264.g Linum usitatissimum Lus10022264.g I
Lus10027676.g Linum usitatissimum Lus10027676.g I
Lus10039940.g Linum usitatissimum Lus10039940.g I
MDP0000130659 Malus domestica MDP0000130659 I
MDP0000254288 Malus domestica MDP0000254288 I
MDP0000273432 Malus domestica MDP0000273432 I
MDP0000643326 Malus domestica MDP0000643326 I
MDP0000848210 Malus domestica MDP0000848210 I
orange1.1g027472m.g Citrus sinensis orange1.1g027472m.g I
orange1.1g031572m.g Citrus sinensis orange1.1g031572m.g I
orange1.1g036845m.g Citrus sinensis orange1.1g036845m.g I
Pavir.Eb00458 Panicum virgatum Pavir.Eb00458 I
Pavir.J38993 Panicum virgatum Pavir.J38993 I
SapurV1A.0011s0490 Salix purpurea SapurV1A.0011s0490 I
SapurV1A.0093s0490 Salix purpurea SapurV1A.0093s0490 I
SapurV1A.0164s0090 Salix purpurea SapurV1A.0164s0090 I
SapurV1A.1247s0030 Salix purpurea SapurV1A.1247s0030 I
SapurV1A.1328s0080 Salix purpurea SapurV1A.1328s0080 I
Thhalv10004979m.g Eutrema salsugineum Thhalv10004979m.g I
Thhalv10005120m.g Eutrema salsugineum Thhalv10005120m.g I
Thhalv10019572m.g Eutrema salsugineum Thhalv10019572m.g I
PK18922.1 Cannabis sativa PK18922.1 I
PK21510.1 Cannabis sativa PK21510.1 I
PK26472.1 Cannabis sativa PK26472.1 I
PK29334.1 Cannabis sativa PK29334.1 I
chr1.CM0171.410.nc Lotus japonicus chr1.CM0171.410.nc I
chr2.LjT30P12.80.nc Lotus japonicus chr2.LjT30P12.80.nc I
LjSGA_017893.1 Lotus japonicus LjSGA_017893.1 I
LjSGA_042891.1 Lotus japonicus LjSGA_042891.1 I