ENSAMEG00000000695 (Ailuropoda melanoleuca)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 ENSAMEG00000000695 T318117_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RFX5
M03458_2.00 		Homo sapiens
BGTTRCYATRGYAACV
BGTTRCYATRGYAACV		 SELEX
Jolma et al.(2013)
RFX5_1 		0.783 0.987
RFX5
M03459_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_2 		0.783 0.987
RFX5
M03460_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_3 		0.783 0.987
RFX5
M05725_2.00 		Homo sapiens
BGTTRCYANGBGTTGCYRN
NYRGCAACVCNTRGYAACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1 		0.783 0.987
RFX5
M05726_2.00 		Homo sapiens
NYRVYAACSGTTRCYAN
NTRGYAACSGTTRBYRN		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2 		0.783 0.987
RFX5
M08009_2.00 		Homo sapiens
KCRBYDGTTRCYRRG
CYYRGYAACHRVYGM		 ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford 		0.783 0.987
RFX5
M08010_2.00 		Homo sapiens
DBVBYDGTTGCYRGGBVRR
YYBVCCYRGCAACHRVBVH		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford 		0.783 0.987
RFX5
M08011_2.00 		Homo sapiens
TCVBYDGTTDCYRDG
CHYRGHAACHRVBGA		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford 		0.783 0.987
RFX5
M08012_2.00 		Homo sapiens
YDGTTRCYRKGBVRV
BYBVCMYRGYAACHR		 ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford 		0.783 0.987
RFX5
M09364_2.00 		Homo sapiens
VNNVBYDGTTGCYRKGNVRV
BYBNCMYRGCAACHRVBNNB		 Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A 		0.783 0.987
RFX5
M09629_2.00 		Homo sapiens
NDGTTRCYADGV
BCHTRGYAACHN		 Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477 		0.783 0.987
RFX5
M11249_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_03 		0.783 0.987
RFX5
M11250_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_05 		0.783 0.987
RFX5
M05727_2.00 		Homo sapiens
BGTYRYYRNGBGTTGYYRN
NYRRCAACVCNYRRYRACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1 		0.783 0.987
RFX5
M05728_2.00 		Homo sapiens
NTRGYAASSGTYRBYRN
NYRVYRACSSTTRCYAN		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2 		0.783 0.987
Rfx7
M00823_2.00 		Mus musculus
GTYRCYRNSB
VSNYRGYRAC		 PBM
Weirauch et al.(2013)
pTH3516 		0.705 0.620
Rfx7
M00187_2.00 		Mus musculus
BGTHDYYRNN
NNYRRHDACV		 PBM
Badis et al.(2009)
Rfxdc2_3516 		0.705 0.620
RFX7
M05729_2.00 		Homo sapiens
BGTTRCYRY
RYRGYAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX 		0.705 0.620
RFX7
M05730_2.00 		Homo sapiens
BGTTGCYRB
VYRGCAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX 		0.705 0.620
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSAMEP00000000731 RFX 89 168

Links

Other RFX family TFs
Other Ailuropoda melanoleuca TFs

225 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Si032478m.g Setaria italica Si032478m.g I 0.000
Lus10022204.g Linum usitatissimum Lus10022204.g I 0.000
Lus10021213.g Linum usitatissimum Lus10021213.g I 0.000
TRIUR3_25222 Triticum urartu TRIUR3_25222 I 0.000
MTR_7g063220 Medicago truncatula MTR_7g063220 I 0.000
OB02G44430 Oryza brachyantha OB02G44430 I 0.000
Traes_2DS_035AA95E3 Triticum aestivum Traes_2DS_035AA95E3 I 0.000
Traes_2BS_0544D9D4B Triticum aestivum Traes_2BS_0544D9D4B I 0.000
Traes_2AS_099955797 Triticum aestivum Traes_2AS_099955797 I 0.000
Lus10022206.g Linum usitatissimum Lus10022206.g I 0.000
Si019563m.g Setaria italica Si019563m.g I 0.000
Sb04g037590 Sorghum bicolor Sb04g037590 I 0.000
Sb02g009930 Sorghum bicolor Sb02g009930 I 0.000
POPTR_0008s16390 Populus trichocarpa POPTR_0008s16390 I 0.000
POPTR_0016s10480 Populus trichocarpa POPTR_0016s10480 I 0.000
mgf024356m Mimulus guttatus mgf024356m I 0.000
Cucsa.321760 Cucumis sativus Cucsa.321760 I 0.000
chr1.CM0147.870.nc Lotus japonicus chr1.CM0147.870.nc I 0.000
GRMZM2G443109 Zea mays GRMZM2G443109 I 0.000
GRMZM2G409452 Zea mays GRMZM2G409452 I 0.000
GRMZM2G344974 Zea mays GRMZM2G344974 I 0.000
GRMZM2G000126 Zea mays GRMZM2G000126 I 0.000
Cla008944 Citrullus lanatus Cla008944 I 0.000
Pavir.Ab03315 Panicum virgatum Pavir.Ab03315 I 0.000
Pavir.Ba02387 Panicum virgatum Pavir.Ba02387 I 0.000
GLYMA07G16290 Glycine max GLYMA07G16290 I 0.000
SapurV1A.0292s0190 Salix purpurea SapurV1A.0292s0190 I 0.000
SapurV1A.0007s0800 Salix purpurea SapurV1A.0007s0800 I 0.000
F775_00917 Aegilops tauschii F775_00917 I 0.000
BRADI1G52490 Brachypodium distachyon BRADI1G52490 I 0.000
Pavir.Bb00955 Panicum virgatum Pavir.Bb00955 I 0.000
cassava4410.m1 Manihot esculenta cassava4410.m1 N 0.000
Pm002649 Prunus mume Pm002649 N 0.000
Cucsa.117650 Cucumis sativus Cucsa.117650 N 0.000
Cucsa.016990 Cucumis sativus Cucsa.016990 N 0.000
28345.m000111 Ricinus communis 28345.m000111 N 0.000
Pm009419 Prunus mume Pm009419 N 0.000
evm.TU.supercontig_44.98 Carica papaya evm.TU.supercontig_44.98 N 0.000
cassava32634.m1 Manihot esculenta cassava32634.m1 N 0.000
Aquca_003_00162 Aquilegia coerulea Aquca_003_00162 N 0.000
Bostr.3148s0115 Boechera stricta Bostr.3148s0115 N 0.000
Cagra.19122s0001 Capsella grandiflora Cagra.19122s0001 N 0.000
Carubv10028256m.g Capsella rubella Carubv10028256m.g N 0.000
Ciclev10006751m.g Citrus clementina Ciclev10006751m.g N 0.000
Ciclev10022375m.g Citrus clementina Ciclev10022375m.g N 0.000
Eucgr.H00184 Eucalyptus grandis Eucgr.H00184 N 0.000
TCM_020819 Theobroma cacao TCM_020819 N 0.000
gene30215-v1.0-hybrid Fragaria vesca gene30215-v1.0-hybrid N 0.000
Gorai.002G256500 Gossypium raimondii Gorai.002G256500 N 0.000
Gorai.011G172000 Gossypium raimondii Gorai.011G172000 N 0.000
MDP0000143134 Malus domestica MDP0000143134 N 0.000
orange1.1g037433m.g Citrus sinensis orange1.1g037433m.g N 0.000
orange1.1g044013m.g Citrus sinensis orange1.1g044013m.g N 0.000
PK22236.1 Cannabis sativa PK22236.1 N 0.000
PDK_20s1360411g002 Phoenix dactylifera PDK_20s1360411g002 N 0.000
GLYMA12G06340 Glycine max GLYMA12G06340 N 0.000
OB07G18110 Oryza brachyantha OB07G18110 N 0.000
MTR_4g064873 Medicago truncatula MTR_4g064873 N 0.000
MTR_1g075430 Medicago truncatula MTR_1g075430 N 0.000
MTR_1g070250 Medicago truncatula MTR_1g070250 N 0.000
LPERR07G09750 Leersia perrieri LPERR07G09750 N 0.000
GSMUA_Achr8G14360_001 Musa acuminata GSMUA_Achr8G14360_001 N 0.000
GSMUA_Achr11G02150_001 Musa acuminata GSMUA_Achr11G02150_001 N 0.000
GLYMA20G34840 Glycine max GLYMA20G34840 N 0.000
OBART07G11660 Oryza barthii OBART07G11660 N 0.000
GLYMA10G32810 Glycine max GLYMA10G32810 N 0.000
Bra033683 Brassica rapa Bra033683 N 0.000
Bra027500 Brassica rapa Bra027500 N 0.000
Bo9g059250 Brassica oleracea Bo9g059250 N 0.000
Bo7g065530 Brassica oleracea Bo7g065530 N 0.000
BGIOSGA025569 Oryza indica BGIOSGA025569 N 0.000
AMTR_s00012p00258620 Amborella trichopoda AMTR_s00012p00258620 N 0.000
OS07G0417400 Oryza sativa OS07G0417400 N 0.000
Cla008348 Citrullus lanatus Cla008348 N 0.000
Cla006093 Citrullus lanatus Cla006093 N 0.000
VIT_06s0004g05260 Vitis vinifera VIT_06s0004g05260 N 0.000
TCM_021876 Theobroma cacao TCM_021876 N 0.000
AMTR_s00009p00194700 Amborella trichopoda AMTR_s00009p00194700 N 0.000
scaffold_800693.1 Arabidopsis lyrata scaffold_800693.1 N 0.000
PRUPE_ppb012667mg Prunus persica PRUPE_ppb012667mg N 0.000
PRUPE_ppa021945mg Prunus persica PRUPE_ppa021945mg N 0.000
Cla021877 Citrullus lanatus Cla021877 N 0.000
ORUFI07G11810 Oryza rufipogon ORUFI07G11810 N 0.000
ORGLA07G0099100 Oryza glaberrima ORGLA07G0099100 N 0.000
OPUNC07G10480 Oryza punctata OPUNC07G10480 N 0.000
ONIVA07G09640 Oryza nivara ONIVA07G09640 N 0.000
ONIVA07G09630 Oryza nivara ONIVA07G09630 N 0.000
OLONG_012182 Oryza longistaminata OLONG_012182 N 0.000
OGLUM07G11160 Oryza glumaepatula OGLUM07G11160 N 0.000