CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

ENSAMEG00000016059 *(Ailuropoda melanoleuca)* RFX
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF02257 (RFX_DNA_binding)	IPR003150	ENSAMEG00000016059	T318123_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
Rfx4 M00186_2.00	Mus musculus	GTHDYYNNSN	NSNNRRHDAC	PBM Badis et al.(2009) Rfx4_3761	0.783	1.000
RFX4 M03456_2.00	Homo sapiens	NGTWRYCATRGHWACN	NGTWDCYATGRYWACN	SELEX Jolma et al.(2013) RFX4_1	0.783	1.000
RFX4 M03457_2.00	Homo sapiens	NGTTGCYRRGCAACS	SGTTGCYYRGCAACN	SELEX Jolma et al.(2013) RFX4_2	0.783	1.000
RFX4 M05721_2.00	Homo sapiens	BGTWRYCATGRYWACV	BGTWRYCATGRYWACV	SELEX Yin et al.(2017) RFX4_eDBD_HT-SELEX	0.783	1.000
RFX4 M05722_2.00	Homo sapiens	BGTWRYCATGRYWACV	BGTWRYCATGRYWACV	SELEX Yin et al.(2017) RFX4_eDBD_Methyl-HT-SELEX	0.783	1.000
RFX4 M02448_2.00	Cavia porcellus	GTHDYYNNGN	NCNNRRHDAC	PBM Weirauch et al.(2014) pTH9249	0.783	0.987
Rfx6 M09365_2.00	Mus musculus	BDGTWKCYNDG	CHNRGMAACHV	Misc Kulakovskiy et al.(2013) RFX6_MOUSE.H11MO.0.C	0.717	0.696
Rfx3 M00188_2.00	Mus musculus	SNTRRHDACN	NGTHDYYANS	PBM Badis et al.(2009) Rfx3_3961	0.714	0.684
Rfx3 M03463_2.00	Mus musculus	SGTTRCCATGGYAACS	SGTTRCCATGGYAACS	SELEX Jolma et al.(2013) Rfx3_1	0.714	0.684
Rfx3 M09368_2.00	Mus musculus	BBGTTGCCATGGNRAC	GTYNCCATGGCAACVV	Misc Kulakovskiy et al.(2013) RFX3_MOUSE.H11MO.0.C	0.714	0.684
RFX2 M02449_2.00	Homo sapiens	BGTHRYYADG	CHTRRYDACV	PBM Weirauch et al.(2014) pTH9194	0.713	0.671
RFX2 M02450_2.00	Ornithorhynchus anatinus	NGTHRYYANV	BNTRRYDACN	PBM Weirauch et al.(2014) pTH9269	0.713	0.671
RFX1 M02447_2.00	Anolis carolinensis	GTHRCYANGN	NCNTRGYDAC	PBM Weirauch et al.(2014) pTH9223	0.712	0.646
RFX1 M02451_2.00	Tetraodon nigroviridis	GTHDYYANGN	NCNTRRHDAC	PBM Weirauch et al.(2014) pTH9385	0.712	0.646
RFX1 M05723_2.00	Homo sapiens	BGTTRYCATGRYAACV	BGTTRYCATGRYAACV	SELEX Yin et al.(2017) RFX1_eDBD_HT-SELEX	0.712	0.646
Rfx1 M08162_2.00	Mus musculus	GTTGCYADGGNRAC	GTYNCCHTRGCAAC	ChIP-seq Mathelier et al.(2014) MA0509.1	0.712	0.646
RFX1 M09363_2.00	Homo sapiens	BBBSSNGTTGCCADGGNRMCVV	BBGKYNCCHTGGCAACNSSVVV	Misc Kulakovskiy et al.(2013) RFX1_HUMAN.H11MO.0.B	0.712	0.646
Rfx1 M09367_2.00	Mus musculus	BBBSSNGTTGCCADGGNRMCVV	BBGKYNCCHTGGCAACNSSVVV	Misc Kulakovskiy et al.(2013) RFX1_MOUSE.H11MO.0.A	0.712	0.646
RFX1 M11245_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$EFC_Q6	0.712	0.646
RFX1 M11246_2.00	Homo sapiens	HNGTTRCYWVGYDMYNN	NNRKHRCBWRGYAACND	Transfac Matys et al.(2006) V$RFX1_01	0.712	0.646
RFX1 M11247_2.00	Homo sapiens	HNGTTRCYWBVGYDMYNN	NNRKHRCBVWRGYAACND	Transfac Matys et al.(2006) V$RFX1_02	0.712	0.646
RFX1 M11248_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$RFX1_Q6	0.712	0.646
RFX1 M05724_2.00	Homo sapiens	BGTWRYCATGRYWACV	BGTWRYCATGRYWACV	SELEX Yin et al.(2017) RFX1_eDBD_Methyl-HT-SELEX	0.712	0.646
XP_002157607.1 M02456_2.00	Hydra magnipapillata	GTHDYYDNVN	NBNHRRHDAC	PBM Weirauch et al.(2014) pTH9199	0.711	0.646
G4VLF2_SCHMA M02452_2.00	Schistosoma mansoni	GTTGCTAD	HTAGCAAC	PBM Weirauch et al.(2014) pTH8587	0.710	0.620
GB41876 M02453_2.00	Apis mellifera	GTHDCYANVN	NBNTRGHDAC	PBM Weirauch et al.(2014) pTH9226	0.709	0.658
Sjc_0102030 M02455_2.00	Schistosoma japonicum	GTTRCYANG	CNTRGYAAC	PBM Weirauch et al.(2014) pTH9285	0.708	0.608
Rfx M03959_2.00	Drosophila melanogaster	NGTHRCYATRGYDACN	NGTHRCYATRGYDACN	SELEX Nitta et al.(2015) Rfx_1	0.708	0.608
Rfx M03960_2.00	Drosophila melanogaster	GTTGCTARGCAAC	GTTGCYTAGCAAC	SELEX Nitta et al.(2015) Rfx_2	0.708	0.608
Rfx M03961_2.00	Drosophila melanogaster	BGTWRCCATGGYWACV	BGTWRCCATGGYWACV	SELEX Nitta et al.(2015) Rfx_3	0.708	0.608
Rfx M03962_2.00	Drosophila melanogaster	GTTRCYAWTRGYAAC	GTTRCYAWTRGYAAC	SELEX Nitta et al.(2015) Rfx_4	0.708	0.608
Rfx M03963_2.00	Drosophila melanogaster	GTTGCTARGCAAC	GTTGCYTAGCAAC	SELEX Nitta et al.(2015) Rfx_5	0.708	0.608
Rfx2 M03461_2.00	Mus musculus	BGTTRCCATGGYAACV	BGTTRCCATGGYAACV	SELEX Jolma et al.(2013) Rfx2_1	0.705	0.633
Rfx2 M03462_2.00	Mus musculus	SGTTGCTARGCAACV	BGTTGCYTAGCAACS	SELEX Jolma et al.(2013) Rfx2_2	0.705	0.633
Rfx2 M05888_2.00	Mus musculus	NGTTRCYATGGHDAY	RTHDCCATRGYAACN	SMiLE-seq Isakova et al.(2017) RFX2	0.705	0.633
Rfx2 M09366_2.00	Mus musculus	NBYBGTYNCCMTGGCAACNSSS	SSSNGTTGCCAKGGNRACVRVN	Misc Kulakovskiy et al.(2013) RFX2_MOUSE.H11MO.0.A	0.705	0.633
RFX3 M03452_2.00	Homo sapiens	NGTTRCCATGGHAACV	BGTTDCCATGGYAACN	SELEX Jolma et al.(2013) RFX3_1	0.704	0.646
RFX3 M03453_2.00	Homo sapiens	BGTTGCTARGCAACS	SGTTGCYTAGCAACV	SELEX Jolma et al.(2013) RFX3_2	0.704	0.646
RFX3 M02750_2.00	Homo sapiens	GTTRYYATGG	CCATRRYAAC	SELEX Jolma et al.(2010) RFX3_dimer	0.704	0.646
RFX3 M05715_2.00	Homo sapiens	NGTTRYYATRRYAACN	NGTTRYYATRRYAACN	SELEX Yin et al.(2017) RFX3_eDBD_HT-SELEX_1	0.704	0.646
RFX3 M05716_2.00	Homo sapiens	BGTTGCTARGCAACS	SGTTGCYTAGCAACV	SELEX Yin et al.(2017) RFX3_eDBD_HT-SELEX_2	0.704	0.646
RFX3 M09361_2.00	Homo sapiens	BGTTRCCATGGYRN	NYRCCATGGYAACV	Misc Kulakovskiy et al.(2013) RFX3_HUMAN.H11MO.0.B	0.704	0.646
RFX3 M09627_2.00	Homo sapiens	BNGTTGCCATGGCAAC	GTTGCCATGGCAACNV	Misc Heinz et al.(2010) K562-RFX3_SRA012198	0.704	0.646
RFX3 M05717_2.00	Homo sapiens	BGTTRYYATRRYAACV	BGTTRYYATRRYAACV	SELEX Yin et al.(2017) RFX3_eDBD_Methyl-HT-SELEX_1	0.704	0.646
RFX3 M05718_2.00	Homo sapiens	BGTTGCTARGCAACV	BGTTGCYTAGCAACV	SELEX Yin et al.(2017) RFX3_eDBD_Methyl-HT-SELEX_2	0.704	0.646
daf-19 M00709_2.00	Caenorhabditis elegans	SGTTRCTADG	CHTAGYAACS	PBM Narasimhan et al.(2015) pTH10021	0.704	0.608
RFX2 M03454_2.00	Homo sapiens	BGTTRCCATGGYAACV	BGTTRCCATGGYAACV	SELEX Jolma et al.(2013) RFX2_1	0.703	0.633
RFX2 M03455_2.00	Homo sapiens	SGTTGCTARGCAACS	SGTTGCYTAGCAACS	SELEX Jolma et al.(2013) RFX2_2	0.703	0.633
RFX2 M05719_2.00	Homo sapiens	NGTWDYYATRRHWACN	NGTWDYYATRRHWACN	SELEX Yin et al.(2017) RFX2_eDBD_HT-SELEX	0.703	0.633
RFX2 M09362_2.00	Homo sapiens	YNGTTGCCATGGVRACVV	BBGTYBCCATGGCAACNR	Misc Kulakovskiy et al.(2013) RFX2_HUMAN.H11MO.0.A	0.703	0.633
RFX2 M09628_2.00	Homo sapiens	BGTTKCCATGGMAAC	GTTKCCATGGMAACV	Misc Heinz et al.(2010) LoVo-RFX2_GSE49402	0.703	0.633
RFX2 M05720_2.00	Homo sapiens	BGTTRCCATGRYAACV	BGTTRYCATGGYAACV	SELEX Yin et al.(2017) RFX2_eDBD_Methyl-HT-SELEX	0.703	0.633
PHUM046580 M02454_2.00	Pediculus humanus	NGTHDCYANV	BNTRGHDACN	PBM Weirauch et al.(2014) pTH9278	0.700	0.646
RFX1 M00066_2.00	Saccharomyces cerevisiae	NSGTTGCYAN	NTRGCAACSN	PBM Badis et al.(2008) RFX1_4537	0.651	0.430
RFX1 M07494_2.00	Saccharomyces cerevisiae	BGTTRCYA	TRGYAACV	PBM, CSA and or DIP-chip Mathelier et al.(2014) MA0365.1	0.651	0.430
RFX1 M08600_2.00	Saccharomyces cerevisiae	CGTYRBYAYRGYWACM	KGTWRCYRTRVYRACG	Misc DeBoer et al.(2011) YLR176C_1478	0.651	0.430
RFX1 M08601_2.00	Saccharomyces cerevisiae	BGTTRCYA	TRGYAACV	Misc DeBoer et al.(2011) YLR176C_496	0.651	0.430
RFX1 M11251_2.00	Saccharomyces cerevisiae	Transfac license required	Transfac license required	Transfac Matys et al.(2006) F$RFX1_02	0.651	0.430
For this family, TFs with SR scores > 0.650* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
ENSAMEP00000016971	RFX	44	122	TPATLQWLEENYEIAEGVCIPRSALYMHYLDFCEKNDTQPVNAASFGKIIRQQFPQLTTRRLGTRGQSKYHYYGIAVKE

Links
Other RFX family TFs
Other *Ailuropoda melanoleuca* TFs

620 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
ZBTB49	Homo sapiens	ENSG00000168826	D	0.000
ZBTB49	Sus scrofa	ENSSSCG00000008728	I	0.000
ENSNLEG00000016142	Nomascus leucogenys	ENSNLEG00000016142	I	0.000
ENSOARG00000007577	Ovis aries	ENSOARG00000007577	I	0.000
ZBTB49	Oryctolagus cuniculus	ENSOCUG00000007993	I	0.000
ZBTB49	Otolemur garnettii	ENSOGAG00000000988	I	0.000
ENSPANG00000015665	Papio anubis	ENSPANG00000015665	I	0.000
ENSPPYG00000014601	Pongo abelii	ENSPPYG00000014601	I	0.000
ZBTB49	Pan troglodytes	ENSPTRG00000015868	I	0.000
ZBTB49	Pteropus vampyrus	ENSPVAG00000015185	I	0.000
Zbtb49	Rattus norvegicus	ENSRNOG00000005633	I	0.000
ENSSHAG00000008414	Sarcophilus harrisii	ENSSHAG00000008414	I	0.000
ZBTB49	Monodelphis domestica	ENSMODG00000001516	I	0.000
ENSSTOG00000000550	Ictidomys tridecemlineatus	ENSSTOG00000000550	I	0.000
ENSTBEG00000005000	Tupaia belangeri	ENSTBEG00000005000	I	0.000
ZBTB49	Taeniopygia guttata	ENSTGUG00000009920	I	0.000
Aan_R008590	Calypte anna	Aan_R008590	I	0.000
Afo_R000623	Aptenodytes forsteri	Afo_R000623	I	0.000
Brh_R008967	Buceros rhinoceros	Brh_R008967	I	0.000
ENSP00000338807-D1	Bos grunniens	ENSP00000338807-D1	I	0.000
Gfo_R014333	Geospiza fortis	Gfo_R014333	I	0.000
Myotis_brandtii_ZBTB49_10013405	Myotis brandtii	Myotis_brandtii_ZBTB49_10013405	I	0.000
Pvit_18935	Pogona vitticeps	Pvit_18935	I	0.000
ZBTB49	Felis catus	ENSFCAG00000015510	I	0.000
ENSAMEG00000013670	Ailuropoda melanoleuca	ENSAMEG00000013670	I	0.000
ENSAPLG00000003489	Anas platyrhynchos	ENSAPLG00000003489	I	0.000
ZBTB49	Bos taurus	ENSBTAG00000014680	I	0.000
ZBTB49	Canis familiaris	ENSCAFG00000015688	I	0.000
ZBTB49	Callithrix jacchus	ENSCJAG00000000119	I	0.000
ZBTB49	Cavia porcellus	ENSCPOG00000007981	I	0.000
ENSCSAG00000016270	Chlorocebus sabaeus	ENSCSAG00000016270	I	0.000
ZBTB49	Dasypus novemcinctus	ENSDNOG00000016261	I	0.000
ZBTB49	Equus caballus	ENSECAG00000013694	I	0.000
ENSFALG00000009426	Ficedula albicollis	ENSFALG00000009426	I	0.000
Zbtb49	Mus musculus	ENSMUSG00000029127	I	0.000
ZBTB49	Gallus gallus	ENSGALG00000015009	I	0.000
ZBTB49	Gorilla gorilla	ENSGGOG00000013012	I	0.000
ENSLACG00000007886	Latimeria chalumnae	ENSLACG00000007886	I	0.000
ZBTB49	Loxodonta africana	ENSLAFG00000016590	I	0.000
ENSLOCG00000009974	Lepisosteus oculatus	ENSLOCG00000009974	I	0.000
ZBTB49	Meleagris gallopavo	ENSMGAG00000012706	I	0.000
ENSMICG00000000204	Microcebus murinus	ENSMICG00000000204	I	0.000
ZBTB49	Myotis lucifugus	ENSMLUG00000009904	I	0.000
ZBTB49	Macaca mulatta	ENSMMUG00000023394	I	0.000
ZBTB49	Anolis carolinensis	ENSACAG00000010957	I	0.000

ENSAMEG00000016059 (Ailuropoda melanoleuca) RFX

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

620 Related TFs

ENSAMEG00000016059 **(Ailuropoda melanoleuca)
RFX**