RFX5 (Dasypus novemcinctus)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 ENSDNOG00000035113 T318203_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RFX5
M03458_2.00 		Homo sapiens
BGTTRCYATRGYAACV
BGTTRCYATRGYAACV		 SELEX
Jolma et al.(2013)
RFX5_1 		0.687 0.754
RFX5
M03459_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_2 		0.687 0.754
RFX5
M03460_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_3 		0.687 0.754
RFX5
M05725_2.00 		Homo sapiens
BGTTRCYANGBGTTGCYRN
NYRGCAACVCNTRGYAACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1 		0.687 0.754
RFX5
M05726_2.00 		Homo sapiens
NYRVYAACSGTTRCYAN
NTRGYAACSGTTRBYRN		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2 		0.687 0.754
RFX5
M08009_2.00 		Homo sapiens
KCRBYDGTTRCYRRG
CYYRGYAACHRVYGM		 ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford 		0.687 0.754
RFX5
M08010_2.00 		Homo sapiens
DBVBYDGTTGCYRGGBVRR
YYBVCCYRGCAACHRVBVH		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford 		0.687 0.754
RFX5
M08011_2.00 		Homo sapiens
TCVBYDGTTDCYRDG
CHYRGHAACHRVBGA		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford 		0.687 0.754
RFX5
M08012_2.00 		Homo sapiens
YDGTTRCYRKGBVRV
BYBVCMYRGYAACHR		 ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford 		0.687 0.754
RFX5
M09364_2.00 		Homo sapiens
VNNVBYDGTTGCYRKGNVRV
BYBNCMYRGCAACHRVBNNB		 Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A 		0.687 0.754
RFX5
M09629_2.00 		Homo sapiens
NDGTTRCYADGV
BCHTRGYAACHN		 Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477 		0.687 0.754
RFX5
M11249_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_03 		0.687 0.754
RFX5
M11250_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_05 		0.687 0.754
RFX5
M05727_2.00 		Homo sapiens
BGTYRYYRNGBGTTGYYRN
NYRRCAACVCNYRRYRACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1 		0.687 0.754
RFX5
M05728_2.00 		Homo sapiens
NTRGYAASSGTYRBYRN
NYRVYRACSSTTRCYAN		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2 		0.687 0.754
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDNOP00000025080 RFX 105 174

Links

Other RFX family TFs
Other Dasypus novemcinctus TFs

61 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PGSC0003DMG400010208 Solanum tuberosum PGSC0003DMG400010208 I 0.000
OMERI06G24090 Oryza meridionalis OMERI06G24090 I 0.000
OPUNC09G11520 Oryza punctata OPUNC09G11520 I 0.000
Solyc02g076920.2 Solanum lycopersicum Solyc02g076920.2 I 0.000
Ca_07790 Cicer arietinum Ca_07790 N 0.000
TCM_026346 Theobroma cacao TCM_026346 N 0.000
cassava36725.valid.m1 Manihot esculenta cassava36725.valid.m1 N 0.000
29908.m006255 Ricinus communis 29908.m006255 N 0.000
29883.m001988 Ricinus communis 29883.m001988 N 0.000
Pm020229 Prunus mume Pm020229 N 0.000
Traes_2AL_7A37B5232 Triticum aestivum Traes_2AL_7A37B5232 N 0.000
Pm003525 Prunus mume Pm003525 N 0.000
Cla015040 Citrullus lanatus Cla015040 N 0.000
Cla011475 Citrullus lanatus Cla011475 N 0.000
Ca_12194 Cicer arietinum Ca_12194 N 0.000
Cucsa.289090 Cucumis sativus Cucsa.289090 N 0.000
Ca_03755 Cicer arietinum Ca_03755 N 0.000
VIT_14s0030g02230 Vitis vinifera VIT_14s0030g02230 N 0.000
VIT_07s0141g00220 Vitis vinifera VIT_07s0141g00220 N 0.000
VIT_05s0020g04620 Vitis vinifera VIT_05s0020g04620 N 0.000
TRIUR3_09991 Triticum urartu TRIUR3_09991 N 0.000
Traes_5BL_553BE31FE Triticum aestivum Traes_5BL_553BE31FE N 0.000
Traes_2DL_5F0BD9D6F Triticum aestivum Traes_2DL_5F0BD9D6F N 0.000
Traes_2BL_649181D92 Triticum aestivum Traes_2BL_649181D92 N 0.000
Gorai.007G277200 Gossypium raimondii Gorai.007G277200 N 0.000
BGIOSGA028855 Oryza indica BGIOSGA028855 N 0.000
chr1.CM0375.380.nc Lotus japonicus chr1.CM0375.380.nc N 0.000
PK25419.1 Cannabis sativa PK25419.1 N 0.000
PK20184.1 Cannabis sativa PK20184.1 N 0.000
SapurV1A.0006s1290 Salix purpurea SapurV1A.0006s1290 N 0.000
Pavir.J25149 Panicum virgatum Pavir.J25149 N 0.000
Pavir.J16121 Panicum virgatum Pavir.J16121 N 0.000
Pavir.Ba01985 Panicum virgatum Pavir.Ba01985 N 0.000
orange1.1g022649m.g Citrus sinensis orange1.1g022649m.g N 0.000
MDP0000295593 Malus domestica MDP0000295593 N 0.000
MDP0000176749 Malus domestica MDP0000176749 N 0.000
chr5.LjT29J15.30.nc Lotus japonicus chr5.LjT29J15.30.nc N 0.000
Gorai.007G141800 Gossypium raimondii Gorai.007G141800 N 0.000
Gorai.001G242500 Gossypium raimondii Gorai.001G242500 N 0.000
gene16564-v1.0-hybrid Fragaria vesca gene16564-v1.0-hybrid N 0.000
gene08188-v1.0-hybrid Fragaria vesca gene08188-v1.0-hybrid N 0.000
evm.TU.supercontig_117.94 Carica papaya evm.TU.supercontig_117.94 N 0.000
Eucgr.H04337 Eucalyptus grandis Eucgr.H04337 N 0.000
Eucgr.B01487 Eucalyptus grandis Eucgr.B01487 N 0.000
Ciclev10021443m.g Citrus clementina Ciclev10021443m.g N 0.000
Aquca_017_00590 Aquilegia coerulea Aquca_017_00590 N 0.000
Cucsa.388780 Cucumis sativus Cucsa.388780 N 0.000
GLYMA20G36770 Glycine max GLYMA20G36770 N 0.000
MTR_1g080890 Medicago truncatula MTR_1g080890 N 0.000
MTR_1g070870 Medicago truncatula MTR_1g070870 N 0.000
MLOC_70640 Hordeum vulgare MLOC_70640 N 0.000
MLOC_2366 Hordeum vulgare MLOC_2366 N 0.000
LPERR08G15030 Leersia perrieri LPERR08G15030 N 0.000
GSMUA_Achr9G15140_001 Musa acuminata GSMUA_Achr9G15140_001 N 0.000
GSMUA_Achr3G06780_001 Musa acuminata GSMUA_Achr3G06780_001 N 0.000
GRMZM2G145146 Zea mays GRMZM2G145146 N 0.000
GRMZM2G113257 Zea mays GRMZM2G113257 N 0.000
GRMZM2G082630 Zea mays GRMZM2G082630 N 0.000
OB08G25230 Oryza brachyantha OB08G25230 N 0.000
GLYMA19G34360 Glycine max GLYMA19G34360 N 0.000
GLYMA10G30430 Glycine max GLYMA10G30430 N 0.000
GLYMA10G03690 Glycine max GLYMA10G03690 N 0.000
GLYMA03G31510 Glycine max GLYMA03G31510 N 0.000
GLYMA02G16110 Glycine max GLYMA02G16110 N 0.000
F775_02130 Aegilops tauschii F775_02130 N 0.000
BRADI4G32470 Brachypodium distachyon BRADI4G32470 N 0.000
BRADI3G38360 Brachypodium distachyon BRADI3G38360 N 0.000
BGIOSGA030928 Oryza indica BGIOSGA030928 N 0.000
OS08G0477900 Oryza sativa OS08G0477900 N 0.000
Solyc09g083220.2 Solanum lycopersicum Solyc09g083220.2 N 0.000
Si033077m.g Setaria italica Si033077m.g N 0.000
Si014356m.g Setaria italica Si014356m.g N 0.000
Sb07g023280 Sorghum bicolor Sb07g023280 N 0.000
Sb02g026920 Sorghum bicolor Sb02g026920 N 0.000
PRUPE_ppa009299mg Prunus persica PRUPE_ppa009299mg N 0.000
PRUPE_ppa008172mg Prunus persica PRUPE_ppa008172mg N 0.000
POPTR_0002s04620 Populus trichocarpa POPTR_0002s04620 N 0.000
PGSC0003DMG400013393 Solanum tuberosum PGSC0003DMG400013393 N 0.000
PGSC0003DMG400006089 Solanum tuberosum PGSC0003DMG400006089 N 0.000
TCM_004217 Theobroma cacao TCM_004217 N 0.000
ORUFI09G14130 Oryza rufipogon ORUFI09G14130 N 0.000
ORUFI08G20260 Oryza rufipogon ORUFI08G20260 N 0.000
ORGLA08G0157100 Oryza glaberrima ORGLA08G0157100 N 0.000
OPUNC08G16020 Oryza punctata OPUNC08G16020 N 0.000
ONIVA09G13640 Oryza nivara ONIVA09G13640 N 0.000
ONIVA08G20180 Oryza nivara ONIVA08G20180 N 0.000
OMERI09G10230 Oryza meridionalis OMERI09G10230 N 0.000
OGLUM08G19000 Oryza glumaepatula OGLUM08G19000 N 0.000
OBART09G13210 Oryza barthii OBART09G13210 N 0.000